Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZDE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZDE entry

There are 2 chains in PDB entry 7ZDE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	LEU 573
D	ASN 2	ILE 588

There are 56 helices in PDB entry 7ZDE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	1	3	Right-handed 310
Helix 2	AA2	C	4	9	Right-handed alpha
Helix 3	AA3	C	10	13	Right-handed 310
Helix 4	AA4	C	14	50	Right-handed alpha
Helix 5	AA5	C	51	54	Right-handed 310
Helix 6	AA6	C	59	104	Right-handed alpha
Helix 7	AA7	C	119	131	Right-handed alpha
Helix 8	AA8	C	132	134	Right-handed 310
Helix 9	AA9	C	137	156	Right-handed alpha
Helix 10	AB1	C	159	176	Right-handed alpha
Helix 11	AB2	C	176	185	Right-handed alpha
Helix 12	AB3	C	186	209	Right-handed alpha
Helix 13	AB4	C	209	216	Right-handed alpha
Helix 14	AB5	C	218	268	Right-handed alpha
Helix 15	AB6	C	278	291	Right-handed alpha
Helix 16	AB7	C	292	293	Right-handed 310
Helix 17	AB8	C	294	295	Right-handed 310
Helix 18	AB9	C	296	303	Right-handed alpha
Helix 19	AC1	C	303	319	Right-handed alpha
Helix 20	AC2	C	381	386	Right-handed alpha
Helix 21	AC3	C	403	407	Right-handed 310
Helix 22	AC4	C	408	413	Right-handed alpha
Helix 23	AC5	C	429	435	Right-handed alpha
Helix 24	AC6	C	442	453	Right-handed alpha
Helix 25	AC7	C	455	460	Right-handed 310
Helix 26	AC8	C	462	466	Right-handed 310
Helix 27	AC9	C	479	491	Right-handed alpha
Helix 28	AD1	C	506	521	Right-handed alpha
Helix 29	AD2	C	535	539	Right-handed 310
Helix 30	AD3	C	555	562	Right-handed alpha
Helix 31	AD4	C	564	571	Right-handed alpha
Helix 32	AD5	D	3	14	Right-handed alpha
Helix 33	AD6	D	15	19	Right-handed 310
Helix 34	AD7	D	21	54	Right-handed alpha
Helix 35	AD8	D	58	61	Right-handed 310
Helix 36	AD9	D	62	109	Right-handed alpha
Helix 37	AE1	D	109	115	Right-handed alpha
Helix 38	AE2	D	118	127	Right-handed alpha
Helix 39	AE3	D	127	132	Right-handed alpha
Helix 40	AE4	D	133	139	Right-handed alpha
Helix 41	AE5	D	139	159	Right-handed alpha
Helix 42	AE6	D	162	185	Right-handed alpha
Helix 43	AE7	D	194	201	Right-handed alpha
Helix 44	AE8	D	203	211	Right-handed alpha
Helix 45	AE9	D	211	218	Right-handed alpha
Helix 46	AF1	D	224	274	Right-handed alpha
Helix 47	AF2	D	286	311	Right-handed alpha
Helix 48	AF3	D	311	329	Right-handed alpha
Helix 49	AF4	D	388	397	Right-handed alpha
Helix 50	AF5	D	417	422	Right-handed alpha
Helix 51	AF6	D	438	444	Right-handed alpha
Helix 52	AF7	D	451	462	Right-handed alpha
Helix 53	AF8	D	487	500	Right-handed alpha
Helix 54	AF9	D	517	532	Right-handed alpha
Helix 55	AG1	D	566	572	Right-handed alpha
Helix 56	AG2	D	575	587	Right-handed alpha

There are 6 sheets in PDB entry 7ZDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	342	first strand
Strand 2	C	396	399	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	419	first strand
Strand 2	C	495	498	parallel
Strand 3	C	525	530	parallel
Strand 4	C	369	372	parallel
Strand 5	C	542	546	parallel
Strand 6	C	549	554	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	372	first strand
Strand 2	D	351	353	anti-parallel
Strand 3	D	405	408	anti-parallel
Strand 4	D	411	412	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	366	first strand
Strand 2	D	357	358	anti-parallel
Strand 3	D	401	402	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	381	first strand
Strand 2	D	537	540	parallel
Strand 3	D	506	509	parallel
Strand 4	D	425	428	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	555	557	first strand
Strand 2	D	560	563	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZDE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZDE