Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZDR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZDR entry

There are 2 chains in PDB entry 7ZDR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	LEU 573
D	SER 4	ILE 588

There are 53 helices in PDB entry 7ZDR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	1	3	Right-handed 310
Helix 2	AA2	C	4	9	Right-handed alpha
Helix 3	AA3	C	10	13	Right-handed 310
Helix 4	AA4	C	14	50	Right-handed alpha
Helix 5	AA5	C	51	54	Right-handed 310
Helix 6	AA6	C	59	104	Right-handed alpha
Helix 7	AA7	C	115	132	Right-handed alpha
Helix 8	AA8	C	132	137	Right-handed alpha
Helix 9	AA9	C	137	156	Right-handed alpha
Helix 10	AB1	C	159	176	Right-handed alpha
Helix 11	AB2	C	176	185	Right-handed alpha
Helix 12	AB3	C	185	209	Right-handed alpha
Helix 13	AB4	C	209	216	Right-handed alpha
Helix 14	AB5	C	220	267	Right-handed alpha
Helix 15	AB6	C	277	290	Right-handed alpha
Helix 16	AB7	C	291	293	Right-handed 310
Helix 17	AB8	C	296	319	Right-handed alpha
Helix 18	AB9	C	381	387	Right-handed alpha
Helix 19	AC1	C	405	407	Right-handed 310
Helix 20	AC2	C	408	415	Right-handed alpha
Helix 21	AC3	C	442	454	Right-handed alpha
Helix 22	AC4	C	455	459	Right-handed 310
Helix 23	AC5	C	480	492	Right-handed alpha
Helix 24	AC6	C	506	520	Right-handed alpha
Helix 25	AC7	C	555	562	Right-handed alpha
Helix 26	AC8	C	564	572	Right-handed alpha
Helix 27	AC9	D	5	16	Right-handed alpha
Helix 28	AD1	D	17	19	Right-handed 310
Helix 29	AD2	D	20	54	Right-handed alpha
Helix 30	AD3	D	58	61	Right-handed 310
Helix 31	AD4	D	62	109	Right-handed alpha
Helix 32	AD5	D	110	115	Right-handed alpha
Helix 33	AD6	D	118	128	Right-handed alpha
Helix 34	AD7	D	130	132	Right-handed 310
Helix 35	AD8	D	133	139	Right-handed alpha
Helix 36	AD9	D	139	159	Right-handed alpha
Helix 37	AE1	D	162	185	Right-handed alpha
Helix 38	AE2	D	187	194	Right-handed alpha
Helix 39	AE3	D	194	203	Right-handed alpha
Helix 40	AE4	D	203	211	Right-handed alpha
Helix 41	AE5	D	211	219	Right-handed alpha
Helix 42	AE6	D	220	273	Right-handed alpha
Helix 43	AE7	D	286	310	Right-handed alpha
Helix 44	AE8	D	310	330	Right-handed alpha
Helix 45	AE9	D	388	398	Right-handed alpha
Helix 46	AF1	D	417	422	Right-handed alpha
Helix 47	AF2	D	438	444	Right-handed alpha
Helix 48	AF3	D	451	462	Right-handed alpha
Helix 49	AF4	D	473	477	Right-handed 310
Helix 50	AF5	D	487	500	Right-handed alpha
Helix 51	AF6	D	517	530	Right-handed alpha
Helix 52	AF7	D	566	572	Right-handed alpha
Helix 53	AF8	D	575	587	Right-handed alpha

There are 6 sheets in PDB entry 7ZDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	362	first strand
Strand 2	C	339	344	anti-parallel
Strand 3	C	396	399	anti-parallel
Strand 4	C	402	403	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	419	first strand
Strand 2	C	495	499	parallel
Strand 3	C	526	530	parallel
Strand 4	C	369	372	parallel
Strand 5	C	542	546	parallel
Strand 6	C	549	554	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	429	first strand
Strand 2	C	467	468	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	373	first strand
Strand 2	D	350	352	anti-parallel
Strand 3	D	406	408	anti-parallel
Strand 4	D	411	412	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	366	first strand
Strand 2	D	356	358	anti-parallel
Strand 3	D	401	403	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	429	first strand
Strand 2	D	506	510	parallel
Strand 3	D	536	540	parallel
Strand 4	D	379	382	parallel
Strand 5	D	552	557	parallel
Strand 6	D	560	565	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZDR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZDR