Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZF1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZF1 entry

There is 1 chain in PDB entry 7ZF1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 172	TYR 841

There are120 helices in PDB entry 7ZF1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	172	182	Right-handed alpha
Helix 2	AA2	A	187	205	Right-handed alpha
Helix 3	AA3	A	209	221	Right-handed alpha
Helix 4	AA4	A	225	249	Right-handed alpha
Helix 5	AA5	A	262	282	Right-handed alpha
Helix 6	AA6	A	282	293	Right-handed alpha
Helix 7	AA7	A	306	319	Right-handed alpha
Helix 8	AA8	A	322	346	Right-handed alpha
Helix 9	AA9	A	347	354	Right-handed alpha
Helix 10	AB1	A	360	371	Right-handed alpha
Helix 11	AB2	A	376	393	Right-handed alpha
Helix 12	AB3	A	408	410	Right-handed 310
Helix 13	AB4	A	411	433	Right-handed alpha
Helix 14	AB5	A	436	449	Right-handed alpha
Helix 15	AB6	A	456	470	Right-handed alpha
Helix 16	AB7	A	472	477	Right-handed alpha
Helix 17	AB8	A	477	486	Right-handed alpha
Helix 18	AB9	A	487	491	Right-handed 310
Helix 19	AC1	A	492	503	Right-handed alpha
Helix 20	AC2	A	503	508	Right-handed alpha
Helix 21	AC3	A	510	525	Right-handed alpha
Helix 22	AC4	A	529	547	Right-handed alpha
Helix 23	AC5	A	576	596	Right-handed alpha
Helix 24	AC6	A	598	616	Right-handed alpha
Helix 25	AC7	A	619	633	Right-handed alpha
Helix 26	AC8	A	646	650	Right-handed alpha
Helix 27	AC9	A	663	686	Right-handed alpha
Helix 28	AD1	A	696	716	Right-handed alpha
Helix 29	AD2	A	717	722	Right-handed alpha
Helix 30	AD3	A	733	762	Right-handed alpha
Helix 31	AD4	A	764	790	Right-handed alpha
Helix 32	AD5	A	806	819	Right-handed alpha
Helix 33	AD6	A	822	834	Right-handed alpha
Helix 34	AD7	A	835	856	Right-handed alpha
Helix 35	AD8	A	866	888	Right-handed alpha
Helix 36	AD9	A	889	893	Right-handed 310
Helix 37	AE1	A	896	901	Right-handed alpha
Helix 38	AE2	A	903	923	Right-handed alpha
Helix 39	AE3	A	926	935	Right-handed alpha
Helix 40	AE4	A	950	971	Right-handed alpha
Helix 41	AE5	A	978	994	Right-handed alpha
Helix 42	AE6	A	1000	1017	Right-handed alpha
Helix 43	AE7	A	1021	1040	Right-handed alpha
Helix 44	AE8	A	1042	1058	Right-handed alpha
Helix 45	AE9	A	1083	1113	Right-handed alpha
Helix 46	AF1	A	1126	1150	Right-handed alpha
Helix 47	AF2	A	1156	1188	Right-handed alpha
Helix 48	AF3	A	1192	1205	Right-handed alpha
Helix 49	AF4	A	1205	1219	Right-handed alpha
Helix 50	AF5	A	1238	1246	Right-handed alpha
Helix 51	AF6	A	1248	1272	Right-handed alpha
Helix 52	AF7	A	1274	1278	Right-handed 310
Helix 53	AF8	A	1290	1302	Right-handed alpha
Helix 54	AF9	B	47	55	Right-handed alpha
Helix 55	AG1	B	71	86	Right-handed alpha
Helix 56	AG2	B	88	104	Right-handed alpha
Helix 57	AG3	B	106	115	Right-handed alpha
Helix 58	AG4	B	134	142	Right-handed alpha
Helix 59	AG5	B	145	157	Right-handed alpha
Helix 60	AG6	B	159	167	Right-handed alpha
Helix 61	AG7	B	171	181	Right-handed alpha
Helix 62	AG8	B	188	203	Right-handed alpha
Helix 63	AG9	B	204	214	Right-handed alpha
Helix 64	AH1	B	214	219	Right-handed alpha
Helix 65	AH2	B	223	238	Right-handed alpha
Helix 66	AH3	B	241	252	Right-handed alpha
Helix 67	AH4	B	255	270	Right-handed alpha
Helix 68	AH5	B	271	273	Right-handed 310
Helix 69	AH6	B	277	287	Right-handed alpha
Helix 70	AH7	B	293	304	Right-handed alpha
Helix 71	AH8	B	306	311	Right-handed alpha
Helix 72	AH9	B	337	357	Right-handed alpha
Helix 73	AI1	B	357	372	Right-handed alpha
Helix 74	AI2	B	378	392	Right-handed alpha
Helix 75	AI3	B	395	410	Right-handed alpha
Helix 76	AI4	B	414	424	Right-handed alpha
Helix 77	AI5	B	424	429	Right-handed alpha
Helix 78	AI6	B	431	445	Right-handed alpha
Helix 79	AI7	B	447	465	Right-handed alpha
Helix 80	AI8	B	466	484	Right-handed alpha
Helix 81	AI9	B	485	503	Right-handed alpha
Helix 82	AJ1	B	503	510	Right-handed alpha
Helix 83	AJ2	B	511	520	Right-handed alpha
Helix 84	AJ3	B	525	542	Right-handed alpha
Helix 85	AJ4	B	545	565	Right-handed alpha
Helix 86	AJ5	B	567	587	Right-handed alpha
Helix 87	AJ6	B	603	621	Right-handed alpha
Helix 88	AJ7	B	624	642	Right-handed alpha
Helix 89	AJ8	B	645	664	Right-handed alpha
Helix 90	AJ9	B	698	708	Right-handed alpha
Helix 91	AK1	B	726	728	Right-handed 310
Helix 92	AK2	B	729	746	Right-handed alpha
Helix 93	AK3	B	749	758	Right-handed alpha
Helix 94	AK4	B	767	771	Right-handed 310
Helix 95	AK5	B	776	801	Right-handed alpha
Helix 96	AK6	B	808	833	Right-handed alpha
Helix 97	AK7	B	917	925	Right-handed alpha
Helix 98	AK8	B	929	938	Right-handed 310
Helix 99	AK9	B	961	981	Right-handed alpha
Helix 100	AL1	B	1008	1019	Right-handed alpha
Helix 101	AL2	B	1019	1038	Right-handed alpha
Helix 102	AL3	B	1053	1074	Right-handed alpha
Helix 103	AL4	B	1075	1079	Right-handed 310
Helix 104	AL5	B	1080	1082	Right-handed 310
Helix 105	AL6	B	1083	1099	Right-handed alpha
Helix 106	AL7	B	1106	1120	Right-handed alpha
Helix 107	AL8	B	1121	1124	Right-handed 310
Helix 108	AL9	B	1127	1144	Right-handed alpha
Helix 109	AM1	B	1147	1165	Right-handed alpha
Helix 110	AM2	B	1178	1193	Right-handed alpha
Helix 111	AM3	B	1195	1214	Right-handed alpha
Helix 112	AM4	B	1230	1249	Right-handed alpha
Helix 113	AM5	B	1257	1280	Right-handed alpha
Helix 114	AM6	B	1287	1316	Right-handed alpha
Helix 115	AM7	B	1320	1348	Right-handed alpha
Helix 116	AM8	B	1350	1356	Right-handed alpha
Helix 117	AM9	B	1356	1378	Right-handed alpha
Helix 118	AN1	B	1380	1382	Right-handed 310
Helix 119	AN2	C	8	10	Right-handed 310
Helix 120	AN3	C	22	35	Right-handed alpha

There are 6 sheets in PDB entry 7ZF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	654	first strand
Strand 2	A	657	660	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1284	1289	first strand
Strand 2	B	1384	1389	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	67	68	anti-parallel
Strand 3	B	118	119	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	666	first strand
Strand 2	B	696	697	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	683	first strand
Strand 2	B	760	762	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	65	71	parallel
Strand 4	C	41	45	anti-parallel
Strand 5	C	48	49	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZF1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZF1