Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZGP entry

There are 5 chains in PDB entry 7ZGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 1357
B	SER 2	GLU 94
D	THR 28	PRO 422
E	U 0	G 3
F	ARG 207	GLN 268

There are 24 helices in PDB entry 7ZGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	112	Right-handed alpha
Helix 2	AA2	A	203	207	Right-handed alpha
Helix 3	AA3	A	237	244	Right-handed 310
Helix 4	AA4	A	696	702	Right-handed 310
Helix 5	AA5	A	841	846	Right-handed alpha
Helix 6	AA6	A	1203	1207	Right-handed 310
Helix 7	AA7	A	1262	1280	Right-handed alpha
Helix 8	AA8	A	1287	1292	Right-handed alpha
Helix 9	AA9	A	1310	1318	Right-handed alpha
Helix 10	AB1	A	1320	1329	Right-handed alpha
Helix 11	AB2	A	1334	1348	Right-handed alpha
Helix 12	AB3	A	1349	1355	Right-handed 310
Helix 13	AB4	B	15	22	Right-handed alpha
Helix 14	AB5	B	42	46	Right-handed 310
Helix 15	AB6	B	58	63	Right-handed 310
Helix 16	AB7	B	67	72	Right-handed alpha
Helix 17	AB8	B	77	81	Right-handed 310
Helix 18	AB9	D	35	48	Right-handed alpha
Helix 19	AC1	D	58	65	Right-handed 310
Helix 20	AC2	D	67	71	Right-handed 310
Helix 21	AC3	D	72	79	Right-handed 310
Helix 22	AC4	D	292	294	Right-handed 310
Helix 23	AC5	D	402	407	Right-handed alpha
Helix 24	AC6	F	255	265	Right-handed alpha

There are 29 sheets in PDB entry 7ZGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1224	1231	first strand
Strand 2	A	1244	1250	anti-parallel
Strand 3	A	1255	1260	anti-parallel
Strand 4	A	2	6	anti-parallel
Strand 5	A	1308	1309	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	19	first strand
Strand 2	A	28	32	anti-parallel
Strand 3	A	36	42	anti-parallel
Strand 4	A	48	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	67	first strand
Strand 2	A	74	80	anti-parallel
Strand 3	A	84	91	anti-parallel
Strand 4	A	96	104	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	131	135	anti-parallel
Strand 3	A	139	144	anti-parallel
Strand 4	A	199	202	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	218	first strand
Strand 2	A	226	231	anti-parallel
Strand 3	A	248	259	anti-parallel
Strand 4	A	264	277	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	286	first strand
Strand 2	A	290	295	anti-parallel
Strand 3	A	298	303	anti-parallel
Strand 4	A	308	313	anti-parallel
Strand 5	A	327	330	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	347	first strand
Strand 2	A	362	366	anti-parallel
Strand 3	A	372	377	anti-parallel
Strand 4	A	387	391	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	410	first strand
Strand 2	A	420	426	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	499	505	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	517	first strand
Strand 2	A	538	544	anti-parallel
Strand 3	A	549	554	anti-parallel
Strand 4	A	929	932	anti-parallel
Strand 5	A	921	922	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	526	first strand
Strand 2	A	529	530	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	567	first strand
Strand 2	A	910	915	anti-parallel
Strand 3	A	902	905	anti-parallel
Strand 4	A	893	896	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	578	first strand
Strand 2	A	583	590	anti-parallel
Strand 3	A	595	597	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	625	first strand
Strand 2	A	630	635	anti-parallel
Strand 3	A	638	643	anti-parallel
Strand 4	A	650	653	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	663	first strand
Strand 2	A	667	672	anti-parallel
Strand 3	A	677	681	anti-parallel
Strand 4	A	691	692	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	712	first strand
Strand 2	A	729	736	anti-parallel
Strand 3	A	741	743	anti-parallel
Strand 4	A	753	756	anti-parallel
Strand 5	A	764	769	anti-parallel
Strand 6	A	820	822	anti-parallel
Strand 7	A	808	813	anti-parallel
Strand 8	A	796	803	anti-parallel
Strand 9	A	782	790	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	851	854	first strand
Strand 2	A	862	865	anti-parallel
Strand 3	A	871	874	anti-parallel
Strand 4	A	882	885	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	950	first strand
Strand 2	A	955	962	anti-parallel
Strand 3	A	990	996	anti-parallel
Strand 4	A	1003	1011	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1019	first strand
Strand 2	A	1036	1041	anti-parallel
Strand 3	A	1051	1061	anti-parallel
Strand 4	A	1073	1084	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1022	1023	first strand
Strand 2	A	1033	1034	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1090	1093	first strand
Strand 2	A	1096	1101	anti-parallel
Strand 3	A	1104	1110	anti-parallel
Strand 4	A	1116	1123	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1128	1134	first strand
Strand 2	A	1137	1142	anti-parallel
Strand 3	A	1147	1153	anti-parallel
Strand 4	A	1158	1165	anti-parallel
Strand 5	A	1211	1219	parallel
Strand 6	A	1193	1198	anti-parallel
Strand 7	A	1184	1189	anti-parallel
Strand 8	A	1171	1177	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	88	first strand
Strand 2	D	374	379	anti-parallel
Strand 3	D	364	369	anti-parallel
Strand 4	D	353	358	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	107	111	anti-parallel
Strand 3	D	117	121	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	143	first strand
Strand 2	D	150	154	anti-parallel
Strand 3	D	159	162	anti-parallel
Strand 4	D	168	172	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	185	first strand
Strand 2	D	191	196	anti-parallel
Strand 3	D	201	205	anti-parallel
Strand 4	D	210	215	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	227	first strand
Strand 2	D	234	238	anti-parallel
Strand 3	D	243	246	anti-parallel
Strand 4	D	253	257	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	268	first strand
Strand 2	D	276	281	anti-parallel
Strand 3	D	285	290	anti-parallel
Strand 4	D	296	302	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	312	first strand
Strand 2	D	319	324	anti-parallel
Strand 3	D	327	333	anti-parallel
Strand 4	D	343	345	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	210	first strand
Strand 2	F	241	242	parallel
Strand 3	F	247	250	anti-parallel
Strand 4	F	219	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZGP