Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZJQ entry

There are 5 chains in PDB entry 7ZJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 219	VAL 335
A	SER 337	LYS 434
B	THR 219	LYS 434
C	THR 219	LYS 434
D	THR 219	LYS 434

There are 20 helices in PDB entry 7ZJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	269	271	Right-handed 310
Helix 2	AA2	A	281	289	Right-handed alpha
Helix 3	AA3	A	290	292	Right-handed 310
Helix 4	AA4	A	368	380	Right-handed alpha
Helix 5	AA5	A	383	392	Right-handed alpha
Helix 6	AA6	B	269	275	Right-handed 310
Helix 7	AA7	B	281	289	Right-handed alpha
Helix 8	AA8	B	290	292	Right-handed 310
Helix 9	AA9	B	368	380	Right-handed alpha
Helix 10	AB1	B	383	392	Right-handed alpha
Helix 11	AB2	C	269	275	Right-handed 310
Helix 12	AB3	C	281	289	Right-handed alpha
Helix 13	AB4	C	290	292	Right-handed 310
Helix 14	AB5	C	368	380	Right-handed alpha
Helix 15	AB6	C	383	392	Right-handed alpha
Helix 16	AB7	D	269	275	Right-handed 310
Helix 17	AB8	D	281	289	Right-handed alpha
Helix 18	AB9	D	290	292	Right-handed 310
Helix 19	AC1	D	368	380	Right-handed alpha
Helix 20	AC2	D	383	392	Right-handed alpha

There are 5 sheets in PDB entry 7ZJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	357	366	anti-parallel
Strand 3	A	314	323	anti-parallel
Strand 4	A	226	239	anti-parallel
Strand 5	A	242	251	anti-parallel
Strand 6	B	242	251	anti-parallel
Strand 7	B	226	239	anti-parallel
Strand 8	B	314	323	anti-parallel
Strand 9	B	357	366	anti-parallel
Strand 10	B	352	354	anti-parallel

Back to list of sheets
Back to top of page

There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	267	first strand
Strand 2	A	426	433	parallel
Strand 3	A	294	301	anti-parallel
Strand 4	A	408	418	parallel
Strand 5	A	394	402	anti-parallel
Strand 6	A	329	337	anti-parallel
Strand 7	A	340	349	anti-parallel
Strand 8	D	340	350	parallel
Strand 9	D	328	337	anti-parallel
Strand 10	D	394	402	anti-parallel
Strand 11	D	408	418	anti-parallel
Strand 12	D	294	301	parallel
Strand 13	D	426	433	anti-parallel
Strand 14	D	264	267	parallel

Back to list of sheets
Back to top of page

There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	426	433	parallel
Strand 3	B	294	301	anti-parallel
Strand 4	B	408	418	parallel
Strand 5	B	394	402	anti-parallel
Strand 6	B	328	337	anti-parallel
Strand 7	B	340	350	anti-parallel
Strand 8	C	340	350	parallel
Strand 9	C	328	337	anti-parallel
Strand 10	C	394	402	anti-parallel
Strand 11	C	408	418	anti-parallel
Strand 12	C	294	301	parallel
Strand 13	C	426	433	anti-parallel
Strand 14	C	264	267	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	251	first strand
Strand 2	C	226	239	anti-parallel
Strand 3	C	313	323	anti-parallel
Strand 4	C	357	366	anti-parallel
Strand 5	C	352	354	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	251	first strand
Strand 2	D	226	239	anti-parallel
Strand 3	D	313	323	anti-parallel
Strand 4	D	357	366	anti-parallel
Strand 5	D	352	354	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZJQ