Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZKI entry

There are 7 chains in PDB entry 7ZKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
4
 A 1 G 7
4
 G 9 G 19
4
 A 21 G 31
4
 U 33 G 53
4
 C 56 A 76
6
 VAL 16GLY 107
7
 ARG 4ILE 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7ZKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
6
52 57Right-handed alpha
Helix 2
AA2
6
87 98Right-handed alpha
Helix 3
AA3
6
101 107Right-handed alpha
Helix 4
AA4
7
19 29Right-handed alpha
Helix 5
AA5
7
36 40Right-handed 310
Helix 6
AA6
7
51 58Right-handed alpha
Helix 7
AA7
7
59 65Right-handed 310
Helix 8
AA8
7
85 96Right-handed alpha
Helix 9
AA9
7
110 123Right-handed alpha
Helix 10
AB1
7
133 137Right-handed 310
Helix 11
AB2
7
147 153Right-handed alpha
Helix 12
AB3
7
156 177Right-handed alpha
Helix 13
AB4
7
206 222Right-handed alpha
Helix 14
AB5
7
223 227Right-handed 310
Helix 15
AB6
7
331 344Right-handed alpha
Helix 16
AB7
7
364 377Right-handed alpha
Helix 17
AB8
7
391 405Right-handed alpha
Helix 18
AB9
7
406 409Right-handed 310
Helix 19
AC1
7
419 430Right-handed alpha
Helix 20
AC2
7
438 460Right-handed alpha
Helix 21
AC3
7
460 465Right-handed alpha
Helix 22
AC4
7
558 568Right-handed alpha
Helix 23
AC5
7
574 589Right-handed alpha
Helix 24
AC6
7
592 598Right-handed alpha
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There are 6 sheets in PDB entry 7ZKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
26 31first strand
Strand 2
6
36 41anti-parallel
Strand 3
6
46 50anti-parallel
Strand 4
6
79 85parallel
Strand 5
6
67 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
46 50first strand
Strand 2
7
73 77anti-parallel
Strand 3
7
9 14parallel
Strand 4
7
98 104parallel
Strand 5
7
127 132parallel
Strand 6
7
196 198parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
274 278first strand
Strand 2
7
265 269anti-parallel
Strand 3
7
325 328anti-parallel
Strand 4
7
235 244anti-parallel
Strand 5
7
248 257anti-parallel
Strand 6
7
308 313anti-parallel
Strand 7
7
281 284anti-parallel
Strand 8
7
299 300anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
259 261first strand
Strand 2
7
303 305anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
382 387first strand
Strand 2
7
358 362parallel
Strand 3
7
411 414parallel
Strand 4
7
433 436parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
480 482first strand
Strand 2
7
487 496anti-parallel
Strand 3
7
533 538anti-parallel
Strand 4
7
511 519anti-parallel
Strand 5
7
503 505anti-parallel
Strand 6
7
552 555anti-parallel
Strand 7
7
469 473anti-parallel
Strand 8
7
487 496anti-parallel
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