Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZKQ entry

There are 5 chains in PDB entry 7ZKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 LEU 2ASN 469
b
 ALA 2ALA 67
A
 MET 1PRO 222
C
 LYS 429GLY 844
T
 SER 2PRO 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 70 helices in PDB entry 7ZKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
1 15Right-handed alpha
Helix 2
AA2
2
22 47Right-handed alpha
Helix 3
AA3
2
62 85Right-handed alpha
Helix 4
AA4
2
90 97Right-handed alpha
Helix 5
AA5
2
100 119Right-handed alpha
Helix 6
AA6
2
122 144Right-handed alpha
Helix 7
AA7
2
147 175Right-handed alpha
Helix 8
AA8
2
198 211Right-handed alpha
Helix 9
AA9
2
212 213Right-handed 310
Helix 10
AB1
2
214 217Right-handed 310
Helix 11
AB2
2
218 227Right-handed alpha
Helix 12
AB3
2
229 237Right-handed alpha
Helix 13
AB4
2
238 251Right-handed alpha
Helix 14
AB5
2
257 274Right-handed alpha
Helix 15
AB6
2
275 278Right-handed 310
Helix 16
AB7
2
280 298Right-handed alpha
Helix 17
AB8
2
299 302Right-handed 310
Helix 18
AB9
2
305 330Right-handed alpha
Helix 19
AC1
2
331 334Right-handed 310
Helix 20
AC2
2
346 351Right-handed 310
Helix 21
AC3
2
352 356Right-handed 310
Helix 22
AC4
2
357 373Right-handed alpha
Helix 23
AC5
2
377 392Right-handed alpha
Helix 24
AC6
2
396 421Right-handed alpha
Helix 25
AC7
2
436 453Right-handed alpha
Helix 26
AC8
2
456 467Right-handed alpha
Helix 27
AC9
b
3 25Right-handed alpha
Helix 28
AD1
b
32 67Right-handed alpha
Helix 29
AD2
A
4 9Right-handed alpha
Helix 30
AD3
A
36 38Right-handed 310
Helix 31
AD4
A
152 154Right-handed 310
Helix 32
AD5
C
430 444Right-handed alpha
Helix 33
AD6
C
446 460Right-handed alpha
Helix 34
AD7
C
467 483Right-handed alpha
Helix 35
AD8
C
488 500Right-handed alpha
Helix 36
AD9
C
503 507Right-handed 310
Helix 37
AE1
C
509 523Right-handed alpha
Helix 38
AE2
C
526 538Right-handed alpha
Helix 39
AE3
C
553 567Right-handed alpha
Helix 40
AE4
C
571 586Right-handed alpha
Helix 41
AE5
C
589 603Right-handed alpha
Helix 42
AE6
C
606 623Right-handed alpha
Helix 43
AE7
C
630 645Right-handed alpha
Helix 44
AE8
C
646 660Right-handed alpha
Helix 45
AE9
C
666 680Right-handed alpha
Helix 46
AF1
C
682 695Right-handed alpha
Helix 47
AF2
C
703 714Right-handed alpha
Helix 48
AF3
C
717 727Right-handed alpha
Helix 49
AF4
C
728 732Right-handed 310
Helix 50
AF5
C
736 749Right-handed alpha
Helix 51
AF6
C
752 768Right-handed alpha
Helix 52
AF7
C
772 782Right-handed alpha
Helix 53
AF8
C
785 800Right-handed alpha
Helix 54
AF9
C
800 810Right-handed alpha
Helix 55
AG1
C
826 844Right-handed alpha
Helix 56
AG2
T
3 18Right-handed alpha
Helix 57
AG3
T
21 46Right-handed alpha
Helix 58
AG4
T
52 67Right-handed alpha
Helix 59
AG5
T
80 86Right-handed alpha
Helix 60
AG6
T
91 96Right-handed alpha
Helix 61
AG7
T
97 100Right-handed 310
Helix 62
AG8
T
120 124Right-handed 310
Helix 63
AG9
T
138 149Right-handed alpha
Helix 64
AH1
T
204 213Right-handed alpha
Helix 65
AH2
T
227 231Right-handed 310
Helix 66
AH3
T
261 279Right-handed alpha
Helix 67
AH4
T
289 294Right-handed alpha
Helix 68
AH5
T
295 318Right-handed alpha
Helix 69
AH6
T
327 337Right-handed 310
Helix 70
AH7
T
348 352Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7ZKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
52 54first strand
Strand 2
2
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
187 198anti-parallel
Strand 3
A
57 63anti-parallel
Strand 4
A
43 49anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
187 198anti-parallel
Strand 3
A
105 111anti-parallel
Strand 4
A
145 150anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
81 85anti-parallel
Strand 3
A
175 180anti-parallel
Strand 4
A
117 122anti-parallel
Strand 5
A
130 136anti-parallel
Strand 6
A
155 158anti-parallel
Strand 7
A
161 162anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
48 51first strand
Strand 2
T
252 256parallel
Strand 3
T
219 226anti-parallel
Strand 4
T
70 73parallel
Strand 5
T
180 183parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
346 347first strand
Strand 2
T
355 356anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il