Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZM5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZM5 entry

There are 2 chains in PDB entry 7ZM5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 203	HIS 631
B	TYR 204	HIS 631

There are 15 helices in PDB entry 7ZM5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	213	215	Right-handed 310
Helix 2	AA2	A	241	245	Right-handed 310
Helix 3	AA3	A	273	276	Right-handed 310
Helix 4	AA4	A	332	340	Right-handed alpha
Helix 5	AA5	A	362	366	Right-handed 310
Helix 6	AA6	A	415	423	Right-handed alpha
Helix 7	AA7	A	457	461	Right-handed 310
Helix 8	AA8	A	611	614	Right-handed 310
Helix 9	AA9	B	213	215	Right-handed 310
Helix 10	AB1	B	273	276	Right-handed 310
Helix 11	AB2	B	332	339	Right-handed alpha
Helix 12	AB3	B	362	366	Right-handed 310
Helix 13	AB4	B	415	423	Right-handed alpha
Helix 14	AB5	B	457	461	Right-handed 310
Helix 15	AB6	B	611	614	Right-handed 310

There are 16 sheets in PDB entry 7ZM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	583	593	anti-parallel
Strand 3	A	600	609	anti-parallel
Strand 4	A	618	627	anti-parallel
Strand 5	A	230	232	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	255	first strand
Strand 2	A	259	267	anti-parallel
Strand 3	A	278	288	anti-parallel
Strand 4	A	294	305	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	311	first strand
Strand 2	A	321	329	anti-parallel
Strand 3	A	344	351	anti-parallel
Strand 4	A	356	361	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	311	first strand
Strand 2	A	321	329	anti-parallel
Strand 3	A	314	318	anti-parallel
Strand 4	A	380	381	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	377	first strand
Strand 2	A	388	397	anti-parallel
Strand 3	A	432	442	anti-parallel
Strand 4	A	427	429	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	385	first strand
Strand 2	A	388	397	anti-parallel
Strand 3	A	432	442	anti-parallel
Strand 4	A	452	456	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	470	first strand
Strand 2	A	479	482	anti-parallel
Strand 3	A	493	497	anti-parallel
Strand 4	A	503	506	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	540	first strand
Strand 2	A	547	555	anti-parallel
Strand 3	A	558	566	anti-parallel
Strand 4	A	569	575	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	583	593	anti-parallel
Strand 3	B	600	609	anti-parallel
Strand 4	B	618	627	anti-parallel
Strand 5	B	231	232	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	255	first strand
Strand 2	B	259	267	anti-parallel
Strand 3	B	278	288	anti-parallel
Strand 4	B	294	305	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	311	first strand
Strand 2	B	321	329	anti-parallel
Strand 3	B	344	351	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	311	first strand
Strand 2	B	321	329	anti-parallel
Strand 3	B	314	318	anti-parallel
Strand 4	B	380	381	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	377	first strand
Strand 2	B	388	397	anti-parallel
Strand 3	B	432	442	anti-parallel
Strand 4	B	427	428	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	385	first strand
Strand 2	B	388	397	anti-parallel
Strand 3	B	432	442	anti-parallel
Strand 4	B	452	456	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	470	first strand
Strand 2	B	479	482	anti-parallel
Strand 3	B	493	497	anti-parallel
Strand 4	B	503	506	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	540	first strand
Strand 2	B	547	555	anti-parallel
Strand 3	B	558	566	anti-parallel
Strand 4	B	569	575	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZM5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZM5