Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZMD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZMD entry

There are 2 chains in PDB entry 7ZMD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 535	ALA 1130
B	VAL 536	ASP 584

There are 51 helices in PDB entry 7ZMD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	554	565	Right-handed alpha
Helix 2	AA2	A	608	613	Right-handed 310
Helix 3	AA3	A	615	622	Right-handed alpha
Helix 4	AA4	A	623	640	Right-handed alpha
Helix 5	AA5	A	643	648	Right-handed alpha
Helix 6	AA6	A	670	681	Right-handed alpha
Helix 7	AA7	A	692	694	Right-handed 310
Helix 8	AA8	A	695	710	Right-handed alpha
Helix 9	AA9	A	726	736	Right-handed alpha
Helix 10	AB1	A	769	776	Right-handed alpha
Helix 11	AB2	A	801	817	Right-handed alpha
Helix 12	AB3	A	819	821	Right-handed 310
Helix 13	AB4	A	835	850	Right-handed alpha
Helix 14	AB5	A	863	868	Right-handed alpha
Helix 15	AB6	A	870	872	Right-handed 310
Helix 16	AB7	A	873	889	Right-handed alpha
Helix 17	AB8	A	905	909	Right-handed 310
Helix 18	AB9	A	926	930	Right-handed 310
Helix 19	AC1	A	983	1002	Right-handed alpha
Helix 20	AC2	A	1004	1006	Right-handed 310
Helix 21	AC3	A	1007	1018	Right-handed alpha
Helix 22	AC4	A	1032	1045	Right-handed alpha
Helix 23	AC5	A	1062	1071	Right-handed alpha
Helix 24	AC6	A	1071	1084	Right-handed alpha
Helix 25	AC7	A	1086	1095	Right-handed alpha
Helix 26	AC8	A	1101	1106	Right-handed 310
Helix 27	AC9	B	554	565	Right-handed alpha
Helix 28	AD1	B	608	613	Right-handed 310
Helix 29	AD2	B	615	622	Right-handed alpha
Helix 30	AD3	B	623	640	Right-handed alpha
Helix 31	AD4	B	643	648	Right-handed alpha
Helix 32	AD5	B	670	681	Right-handed alpha
Helix 33	AD6	B	692	694	Right-handed 310
Helix 34	AD7	B	695	710	Right-handed alpha
Helix 35	AD8	B	726	736	Right-handed alpha
Helix 36	AD9	B	769	776	Right-handed alpha
Helix 37	AE1	B	801	817	Right-handed alpha
Helix 38	AE2	B	819	821	Right-handed 310
Helix 39	AE3	B	835	850	Right-handed alpha
Helix 40	AE4	B	863	868	Right-handed alpha
Helix 41	AE5	B	870	872	Right-handed 310
Helix 42	AE6	B	873	889	Right-handed alpha
Helix 43	AE7	B	905	909	Right-handed 310
Helix 44	AE8	B	983	1002	Right-handed alpha
Helix 45	AE9	B	1004	1006	Right-handed 310
Helix 46	AF1	B	1007	1018	Right-handed alpha
Helix 47	AF2	B	1032	1045	Right-handed alpha
Helix 48	AF3	B	1062	1071	Right-handed alpha
Helix 49	AF4	B	1071	1084	Right-handed alpha
Helix 50	AF5	B	1086	1095	Right-handed alpha
Helix 51	AF6	B	1101	1106	Right-handed 310

There are 13 sheets in PDB entry 7ZMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	827	first strand
Strand 2	A	937	943	parallel
Strand 3	A	948	955	anti-parallel
Strand 4	A	781	790	anti-parallel
Strand 5	A	540	548	anti-parallel
Strand 6	A	760	768	anti-parallel
Strand 7	A	715	722	anti-parallel
Strand 8	A	653	658	parallel
Strand 9	A	687	691	parallel
Strand 10	B	687	691	anti-parallel
Strand 11	B	653	658	parallel
Strand 12	B	715	722	parallel
Strand 13	B	760	768	anti-parallel
Strand 14	B	540	548	anti-parallel
Strand 15	B	781	790	anti-parallel
Strand 16	B	948	955	anti-parallel
Strand 17	B	937	943	anti-parallel
Strand 18	B	823	827	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	571	first strand
Strand 2	A	597	598	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	607	first strand
Strand 2	A	1124	1125	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	858	860	first strand
Strand 2	A	911	913	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	891	first strand
Strand 2	A	918	919	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	925	first strand
Strand 2	A	932	933	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	975	981	first strand
Strand 2	A	1024	1030	anti-parallel
Strand 3	A	1053	1056	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	571	first strand
Strand 2	B	597	598	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	607	first strand
Strand 2	B	1124	1125	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	860	first strand
Strand 2	B	911	913	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	891	first strand
Strand 2	B	918	919	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	924	925	first strand
Strand 2	B	932	933	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	975	981	first strand
Strand 2	B	1024	1030	anti-parallel
Strand 3	B	1053	1056	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZMD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZMD