Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZMF entry

There are 2 chains in PDB entry 7ZMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1140SER 1432
B
 GLY 1140VAL 1431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7ZMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1166 1171Right-handed alpha
Helix 2
AA2
A
1181 1197Right-handed alpha
Helix 3
AA3
A
1278 1286Right-handed alpha
Helix 4
AA4
A
1293 1303Right-handed alpha
Helix 5
AA5
A
1309 1312Right-handed 310
Helix 6
AA6
A
1331 1341Right-handed 310
Helix 7
AA7
A
1344 1354Right-handed alpha
Helix 8
AA8
A
1355 1358Right-handed 310
Helix 9
AA9
B
1166 1171Right-handed alpha
Helix 10
AB1
B
1181 1197Right-handed alpha
Helix 11
AB2
B
1278 1286Right-handed alpha
Helix 12
AB3
B
1293 1303Right-handed alpha
Helix 13
AB4
B
1309 1312Right-handed 310
Helix 14
AB5
B
1331 1341Right-handed 310
Helix 15
AB6
B
1344 1354Right-handed alpha
Helix 16
AB7
B
1355 1363Right-handed alpha
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There are 4 sheets in PDB entry 7ZMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1148 1149first strand
Strand 2
A
1156 1162anti-parallel
Strand 3
A
1227 1235anti-parallel
Strand 4
A
1240 1249anti-parallel
Strand 5
A
1257 1268anti-parallel
Strand 6
A
1209 1216anti-parallel
Strand 7
A
1367 1378anti-parallel
Strand 8
A
1416 1427anti-parallel
Strand 9
A
1404 1410anti-parallel
Strand 10
A
1385 1392anti-parallel
Strand 11
A
1323 1329anti-parallel
Strand 12
A
1314 1319anti-parallel
Strand 13
A
1289 1292anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1178first strand
Strand 2
A
1172 1174anti-parallel
Strand 3
A
1305 1307anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1148 1149first strand
Strand 2
B
1156 1162anti-parallel
Strand 3
B
1227 1235anti-parallel
Strand 4
B
1240 1249anti-parallel
Strand 5
B
1257 1268anti-parallel
Strand 6
B
1209 1216anti-parallel
Strand 7
B
1366 1378anti-parallel
Strand 8
B
1416 1430anti-parallel
Strand 9
B
1403 1410anti-parallel
Strand 10
B
1385 1392anti-parallel
Strand 11
B
1323 1329anti-parallel
Strand 12
B
1314 1319anti-parallel
Strand 13
B
1289 1292anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1221 1222first strand
Strand 2
B
1177 1179anti-parallel
Strand 3
B
1172 1174anti-parallel
Strand 4
B
1305 1307anti-parallel
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