Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZML entry

There are 8 chains in PDB entry 7ZML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 12	SER 452
B	PRO 12	SER 452
C	PRO 12	SER 452
D	PRO 12	SER 452
K	GLN 1	PHE 131
E	GLN 1	ASN 128
F	GLN 1	TYR 130
G	GLN 1	PHE 131

There are 96 helices in PDB entry 7ZML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	31	44	Right-handed alpha
Helix 3	AA3	A	59	69	Right-handed alpha
Helix 4	AA4	A	79	93	Right-handed alpha
Helix 5	AA5	A	105	118	Right-handed alpha
Helix 6	AA6	A	129	135	Right-handed alpha
Helix 7	AA7	A	138	148	Right-handed alpha
Helix 8	AA8	A	158	163	Right-handed 310
Helix 9	AA9	A	170	174	Right-handed 310
Helix 10	AB1	A	175	183	Right-handed alpha
Helix 11	AB2	A	196	207	Right-handed alpha
Helix 12	AB3	A	233	235	Right-handed 310
Helix 13	AB4	A	237	250	Right-handed alpha
Helix 14	AB5	A	268	282	Right-handed alpha
Helix 15	AB6	A	294	307	Right-handed alpha
Helix 16	AB7	A	339	348	Right-handed alpha
Helix 17	AB8	A	364	386	Right-handed alpha
Helix 18	AB9	A	390	408	Right-handed alpha
Helix 19	AC1	A	411	421	Right-handed alpha
Helix 20	AC2	A	431	436	Right-handed alpha
Helix 21	AC3	A	436	450	Right-handed alpha
Helix 22	AC4	B	13	23	Right-handed alpha
Helix 23	AC5	B	31	44	Right-handed alpha
Helix 24	AC6	B	59	68	Right-handed alpha
Helix 25	AC7	B	79	93	Right-handed alpha
Helix 26	AC8	B	105	118	Right-handed alpha
Helix 27	AC9	B	129	135	Right-handed alpha
Helix 28	AD1	B	138	148	Right-handed alpha
Helix 29	AD2	B	158	163	Right-handed 310
Helix 30	AD3	B	170	174	Right-handed 310
Helix 31	AD4	B	175	183	Right-handed alpha
Helix 32	AD5	B	196	207	Right-handed alpha
Helix 33	AD6	B	233	235	Right-handed 310
Helix 34	AD7	B	237	250	Right-handed alpha
Helix 35	AD8	B	268	282	Right-handed alpha
Helix 36	AD9	B	294	307	Right-handed alpha
Helix 37	AE1	B	317	320	Right-handed 310
Helix 38	AE2	B	339	348	Right-handed alpha
Helix 39	AE3	B	364	387	Right-handed alpha
Helix 40	AE4	B	390	408	Right-handed alpha
Helix 41	AE5	B	411	421	Right-handed alpha
Helix 42	AE6	B	431	436	Right-handed alpha
Helix 43	AE7	B	436	450	Right-handed alpha
Helix 44	AE8	C	13	23	Right-handed alpha
Helix 45	AE9	C	31	44	Right-handed alpha
Helix 46	AF1	C	59	69	Right-handed alpha
Helix 47	AF2	C	79	93	Right-handed alpha
Helix 48	AF3	C	105	118	Right-handed alpha
Helix 49	AF4	C	129	135	Right-handed alpha
Helix 50	AF5	C	138	148	Right-handed alpha
Helix 51	AF6	C	158	163	Right-handed 310
Helix 52	AF7	C	170	174	Right-handed 310
Helix 53	AF8	C	175	183	Right-handed alpha
Helix 54	AF9	C	196	207	Right-handed alpha
Helix 55	AG1	C	233	235	Right-handed 310
Helix 56	AG2	C	237	250	Right-handed alpha
Helix 57	AG3	C	268	282	Right-handed alpha
Helix 58	AG4	C	294	307	Right-handed alpha
Helix 59	AG5	C	317	320	Right-handed 310
Helix 60	AG6	C	339	348	Right-handed alpha
Helix 61	AG7	C	364	386	Right-handed alpha
Helix 62	AG8	C	390	408	Right-handed alpha
Helix 63	AG9	C	411	421	Right-handed alpha
Helix 64	AH1	C	431	436	Right-handed alpha
Helix 65	AH2	C	436	450	Right-handed alpha
Helix 66	AH3	D	13	23	Right-handed alpha
Helix 67	AH4	D	31	44	Right-handed alpha
Helix 68	AH5	D	56	58	Right-handed 310
Helix 69	AH6	D	59	69	Right-handed alpha
Helix 70	AH7	D	79	93	Right-handed alpha
Helix 71	AH8	D	105	118	Right-handed alpha
Helix 72	AH9	D	129	135	Right-handed alpha
Helix 73	AI1	D	138	148	Right-handed alpha
Helix 74	AI2	D	158	163	Right-handed 310
Helix 75	AI3	D	170	174	Right-handed 310
Helix 76	AI4	D	175	183	Right-handed alpha
Helix 77	AI5	D	196	207	Right-handed alpha
Helix 78	AI6	D	233	235	Right-handed 310
Helix 79	AI7	D	237	250	Right-handed alpha
Helix 80	AI8	D	268	282	Right-handed alpha
Helix 81	AI9	D	294	307	Right-handed alpha
Helix 82	AJ1	D	317	320	Right-handed 310
Helix 83	AJ2	D	339	348	Right-handed alpha
Helix 84	AJ3	D	364	387	Right-handed alpha
Helix 85	AJ4	D	390	408	Right-handed alpha
Helix 86	AJ5	D	411	421	Right-handed alpha
Helix 87	AJ6	D	431	436	Right-handed alpha
Helix 88	AJ7	D	436	450	Right-handed alpha
Helix 89	AJ8	K	61	64	Right-handed 310
Helix 90	AJ9	K	86	90	Right-handed 310
Helix 91	AK1	E	61	64	Right-handed 310
Helix 92	AK2	E	86	90	Right-handed 310
Helix 93	AK3	F	61	64	Right-handed 310
Helix 94	AK4	F	86	90	Right-handed 310
Helix 95	AK5	G	61	64	Right-handed 310
Helix 96	AK6	G	86	90	Right-handed 310

There are 15 sheets in PDB entry 7ZML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	125	128	parallel
Strand 3	A	72	76	parallel
Strand 4	A	151	156	parallel
Strand 5	A	188	192	parallel
Strand 6	A	48	51	parallel
Strand 7	A	213	217	parallel
Strand 8	F	108	115	anti-parallel
Strand 9	F	91	103	anti-parallel
Strand 10	F	28	39	anti-parallel
Strand 11	F	46	52	anti-parallel
Strand 12	F	57	59	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	125	128	parallel
Strand 3	A	72	76	parallel
Strand 4	A	151	156	parallel
Strand 5	A	188	192	parallel
Strand 6	A	48	51	parallel
Strand 7	A	213	217	parallel
Strand 8	F	108	115	anti-parallel
Strand 9	F	91	103	anti-parallel
Strand 10	F	119	121	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	231	first strand
Strand 2	A	357	363	parallel
Strand 3	A	328	333	parallel
Strand 4	A	261	265	parallel
Strand 5	A	312	315	parallel
Strand 6	A	286	289	parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	125	128	parallel
Strand 3	B	72	76	parallel
Strand 4	B	151	156	parallel
Strand 5	B	188	192	parallel
Strand 6	B	48	51	parallel
Strand 7	B	213	217	parallel
Strand 8	E	108	115	anti-parallel
Strand 9	E	91	103	anti-parallel
Strand 10	E	119	124	anti-parallel
Strand 11	E	10	13	parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	125	128	parallel
Strand 3	B	72	76	parallel
Strand 4	B	151	156	parallel
Strand 5	B	188	192	parallel
Strand 6	B	48	51	parallel
Strand 7	B	213	217	parallel
Strand 8	E	108	115	anti-parallel
Strand 9	E	91	103	anti-parallel
Strand 10	E	28	39	anti-parallel
Strand 11	E	46	52	anti-parallel
Strand 12	E	57	59	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	231	first strand
Strand 2	B	357	363	parallel
Strand 3	B	328	333	parallel
Strand 4	B	261	265	parallel
Strand 5	B	312	315	parallel
Strand 6	B	286	289	parallel

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There are 17 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	125	128	parallel
Strand 3	C	72	76	parallel
Strand 4	C	151	156	parallel
Strand 5	C	188	192	parallel
Strand 6	C	48	51	parallel
Strand 7	C	213	217	parallel
Strand 8	K	108	115	anti-parallel
Strand 9	K	91	103	anti-parallel
Strand 10	K	119	124	anti-parallel
Strand 11	K	10	13	parallel
Strand 12	G	10	13	anti-parallel
Strand 13	G	119	124	parallel
Strand 14	G	91	103	anti-parallel
Strand 15	K	28	39	first strand
Strand 16	K	46	52	anti-parallel
Strand 17	K	57	59	anti-parallel

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There are 17 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	100	first strand
Strand 2	D	125	128	parallel
Strand 3	D	72	76	parallel
Strand 4	D	151	156	parallel
Strand 5	D	188	192	parallel
Strand 6	D	48	51	parallel
Strand 7	D	213	217	parallel
Strand 8	G	108	115	anti-parallel
Strand 9	G	91	103	anti-parallel
Strand 10	G	119	124	anti-parallel
Strand 11	G	10	13	parallel
Strand 12	K	10	13	anti-parallel
Strand 13	K	119	124	parallel
Strand 14	K	91	103	anti-parallel
Strand 15	G	28	39	first strand
Strand 16	G	46	52	anti-parallel
Strand 17	G	57	59	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	231	first strand
Strand 2	C	357	363	parallel
Strand 3	C	328	333	parallel
Strand 4	C	261	265	parallel
Strand 5	C	312	315	parallel
Strand 6	C	286	289	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	231	first strand
Strand 2	D	357	363	parallel
Strand 3	D	328	333	parallel
Strand 4	D	261	265	parallel
Strand 5	D	312	315	parallel
Strand 6	D	286	289	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	67	72	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	123	124	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZML

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZML