Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZMO entry

There are 4 chains in PDB entry 7ZMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 12	SER 452
B	PRO 12	SER 452
K	GLN 1	SER 124
C	GLN 1	SER 124

There are 44 helices in PDB entry 7ZMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	25	Right-handed alpha
Helix 2	AA2	A	31	44	Right-handed alpha
Helix 3	AA3	A	55	58	Right-handed 310
Helix 4	AA4	A	59	68	Right-handed alpha
Helix 5	AA5	A	79	93	Right-handed alpha
Helix 6	AA6	A	105	118	Right-handed alpha
Helix 7	AA7	A	129	135	Right-handed alpha
Helix 8	AA8	A	138	148	Right-handed alpha
Helix 9	AA9	A	158	163	Right-handed 310
Helix 10	AB1	A	171	183	Right-handed alpha
Helix 11	AB2	A	196	207	Right-handed alpha
Helix 12	AB3	A	233	235	Right-handed 310
Helix 13	AB4	A	237	250	Right-handed alpha
Helix 14	AB5	A	253	257	Right-handed 310
Helix 15	AB6	A	268	282	Right-handed alpha
Helix 16	AB7	A	294	307	Right-handed alpha
Helix 17	AB8	A	339	349	Right-handed alpha
Helix 18	AB9	A	364	386	Right-handed alpha
Helix 19	AC1	A	389	408	Right-handed alpha
Helix 20	AC2	A	411	421	Right-handed alpha
Helix 21	AC3	A	431	436	Right-handed alpha
Helix 22	AC4	A	436	450	Right-handed alpha
Helix 23	AC5	B	13	24	Right-handed alpha
Helix 24	AC6	B	31	44	Right-handed alpha
Helix 25	AC7	B	58	69	Right-handed alpha
Helix 26	AC8	B	79	93	Right-handed alpha
Helix 27	AC9	B	105	118	Right-handed alpha
Helix 28	AD1	B	129	135	Right-handed alpha
Helix 29	AD2	B	138	148	Right-handed alpha
Helix 30	AD3	B	158	163	Right-handed 310
Helix 31	AD4	B	171	183	Right-handed alpha
Helix 32	AD5	B	196	207	Right-handed alpha
Helix 33	AD6	B	233	235	Right-handed 310
Helix 34	AD7	B	237	250	Right-handed alpha
Helix 35	AD8	B	268	282	Right-handed alpha
Helix 36	AD9	B	294	307	Right-handed alpha
Helix 37	AE1	B	317	320	Right-handed 310
Helix 38	AE2	B	339	349	Right-handed alpha
Helix 39	AE3	B	364	384	Right-handed alpha
Helix 40	AE4	B	389	408	Right-handed alpha
Helix 41	AE5	B	411	421	Right-handed alpha
Helix 42	AE6	B	431	436	Right-handed alpha
Helix 43	AE7	B	436	450	Right-handed alpha
Helix 44	AE8	C	86	90	Right-handed 310

There are 9 sheets in PDB entry 7ZMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	125	128	parallel
Strand 3	A	72	76	parallel
Strand 4	A	151	156	parallel
Strand 5	A	188	191	parallel
Strand 6	A	48	51	parallel
Strand 7	A	213	217	parallel
Strand 8	K	108	115	anti-parallel
Strand 9	K	91	103	anti-parallel
Strand 10	K	119	123	anti-parallel
Strand 11	K	10	12	parallel
Strand 12	C	10	12	anti-parallel
Strand 13	C	119	123	parallel
Strand 14	C	91	102	anti-parallel
Strand 15	C	28	39	anti-parallel
Strand 16	C	46	52	anti-parallel
Strand 17	C	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	59	first strand
Strand 2	K	46	52	anti-parallel
Strand 3	K	28	39	anti-parallel
Strand 4	K	91	103	anti-parallel
Strand 5	K	119	123	anti-parallel
Strand 6	K	10	12	parallel
Strand 7	C	10	12	anti-parallel
Strand 8	C	119	123	parallel
Strand 9	C	91	102	anti-parallel
Strand 10	C	110	115	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	231	first strand
Strand 2	A	357	363	parallel
Strand 3	A	328	333	parallel
Strand 4	A	261	265	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	288	first strand
Strand 2	A	312	314	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	125	128	parallel
Strand 3	B	72	76	parallel
Strand 4	B	151	156	parallel
Strand 5	B	188	192	parallel
Strand 6	B	48	51	parallel
Strand 7	B	214	217	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	231	first strand
Strand 2	B	357	363	parallel
Strand 3	B	328	333	parallel
Strand 4	B	261	265	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	289	first strand
Strand 2	B	312	315	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	17	25	anti-parallel
Strand 3	K	77	83	anti-parallel
Strand 4	K	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZMO