Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZMS entry

There are 2 chains in PDB entry 7ZMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12SER 451
K
 GLN 1SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 7ZMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
56 69Right-handed alpha
Helix 4
AA4
A
79 93Right-handed alpha
Helix 5
AA5
A
105 116Right-handed alpha
Helix 6
AA6
A
129 135Right-handed alpha
Helix 7
AA7
A
138 148Right-handed alpha
Helix 8
AA8
A
158 163Right-handed 310
Helix 9
AA9
A
170 173Right-handed 310
Helix 10
AB1
A
174 183Right-handed alpha
Helix 11
AB2
A
196 207Right-handed alpha
Helix 12
AB3
A
233 235Right-handed 310
Helix 13
AB4
A
237 250Right-handed alpha
Helix 14
AB5
A
253 257Right-handed 310
Helix 15
AB6
A
268 283Right-handed alpha
Helix 16
AB7
A
294 307Right-handed alpha
Helix 17
AB8
A
339 348Right-handed alpha
Helix 18
AB9
A
364 387Right-handed alpha
Helix 19
AC1
A
389 408Right-handed alpha
Helix 20
AC2
A
411 421Right-handed alpha
Helix 21
AC3
A
431 436Right-handed alpha
Helix 22
AC4
A
436 451Right-handed alpha
Helix 23
AC5
K
61 64Right-handed 310
Helix 24
AC6
K
86 90Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 7ZMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
125 128parallel
Strand 3
A
72 76parallel
Strand 4
A
151 156parallel
Strand 5
A
188 192parallel
Strand 6
A
48 51parallel
Strand 7
A
213 217parallel
Strand 8
K
108 115anti-parallel
Strand 9
K
91 103anti-parallel
Strand 10
K
119 123anti-parallel
Strand 11
K
11 12parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
125 128parallel
Strand 3
A
72 76parallel
Strand 4
A
151 156parallel
Strand 5
A
188 192parallel
Strand 6
A
48 51parallel
Strand 7
A
213 217parallel
Strand 8
K
108 115anti-parallel
Strand 9
K
91 103anti-parallel
Strand 10
K
28 39anti-parallel
Strand 11
K
46 52anti-parallel
Strand 12
K
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 231first strand
Strand 2
A
357 363parallel
Strand 3
A
328 333parallel
Strand 4
A
261 265parallel
Strand 5
A
312 315parallel
Strand 6
A
286 289parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
3 7first strand
Strand 2
K
18 25anti-parallel
Strand 3
K
77 82anti-parallel
Strand 4
K
67 72anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il