Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZOP entry

There are 4 chains in PDB entry 7ZOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 888ILE 958
A
 GLY 960LEU 1013
B
 GLY 886ILE 958
B
 GLY 960HIS 1015
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 7ZOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
902 906Right-handed 310
Helix 2
AA2
A
917 921Right-handed 310
Helix 3
AA3
A
944 948Right-handed 310
Helix 4
AA4
A
986 990Right-handed 310
Helix 5
AA5
A
1001 1005Right-handed 310
Helix 6
AA6
B
902 906Right-handed 310
Helix 7
AA7
B
917 921Right-handed 310
Helix 8
AA8
B
944 948Right-handed 310
Helix 9
AA9
B
986 990Right-handed 310
Helix 10
AB1
B
1001 1004Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 7ZOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
974 977first strand
Strand 2
A
964 968anti-parallel
Strand 3
A
931 935anti-parallel
Strand 4
A
922 926anti-parallel
Strand 5
A
889 893anti-parallel
Strand 6
A
1007 1010anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
899 901first strand
Strand 2
A
910 913anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
941 943first strand
Strand 2
A
952 955anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
983 985first strand
Strand 2
A
994 997anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
932 935first strand
Strand 2
B
922 926anti-parallel
Strand 3
B
889 894anti-parallel
Strand 4
B
1006 1010anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
899 901first strand
Strand 2
B
910 913anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
941 943first strand
Strand 2
B
952 955anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
965 968first strand
Strand 2
B
974 977anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
983 985first strand
Strand 2
B
994 997anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il