Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZPF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZPF entry

There are 3 chains in PDB entry 7ZPF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1	HIS 504
B	LYS 4	HIS 504
C	LYS 4	LEU 339

There are 86 helices in PDB entry 7ZPF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	21	Right-handed alpha
Helix 2	AA2	A	26	43	Right-handed alpha
Helix 3	AA3	A	44	48	Right-handed 310
Helix 4	AA4	A	50	68	Right-handed alpha
Helix 5	AA5	A	68	81	Right-handed alpha
Helix 6	AA6	A	85	89	Right-handed 310
Helix 7	AA7	A	99	102	Right-handed 310
Helix 8	AA8	A	107	111	Right-handed 310
Helix 9	AA9	A	112	118	Right-handed alpha
Helix 10	AB1	A	155	172	Right-handed alpha
Helix 11	AB2	A	184	197	Right-handed alpha
Helix 12	AB3	A	209	231	Right-handed alpha
Helix 13	AB4	A	234	247	Right-handed alpha
Helix 14	AB5	A	260	265	Right-handed alpha
Helix 15	AB6	A	266	269	Right-handed 310
Helix 16	AB7	A	303	307	Right-handed 310
Helix 17	AB8	A	322	329	Right-handed alpha
Helix 18	AB9	A	331	344	Right-handed alpha
Helix 19	AC1	A	354	361	Right-handed alpha
Helix 20	AC2	A	403	408	Right-handed alpha
Helix 21	AC3	A	415	420	Right-handed alpha
Helix 22	AC4	A	475	481	Right-handed alpha
Helix 23	AC5	A	498	503	Right-handed 310
Helix 24	AC6	B	11	21	Right-handed alpha
Helix 25	AC7	B	26	43	Right-handed alpha
Helix 26	AC8	B	44	48	Right-handed 310
Helix 27	AC9	B	50	68	Right-handed alpha
Helix 28	AD1	B	68	81	Right-handed alpha
Helix 29	AD2	B	85	89	Right-handed 310
Helix 30	AD3	B	99	102	Right-handed 310
Helix 31	AD4	B	107	111	Right-handed 310
Helix 32	AD5	B	112	118	Right-handed alpha
Helix 33	AD6	B	155	173	Right-handed alpha
Helix 34	AD7	B	184	198	Right-handed alpha
Helix 35	AD8	B	209	230	Right-handed alpha
Helix 36	AD9	B	234	247	Right-handed alpha
Helix 37	AE1	B	260	265	Right-handed alpha
Helix 38	AE2	B	266	269	Right-handed 310
Helix 39	AE3	B	303	307	Right-handed 310
Helix 40	AE4	B	322	329	Right-handed alpha
Helix 41	AE5	B	331	344	Right-handed alpha
Helix 42	AE6	B	354	361	Right-handed alpha
Helix 43	AE7	B	403	408	Right-handed alpha
Helix 44	AE8	B	415	420	Right-handed alpha
Helix 45	AE9	B	498	503	Right-handed 310
Helix 46	AF1	C	11	21	Right-handed alpha
Helix 47	AF2	C	26	43	Right-handed alpha
Helix 48	AF3	C	44	48	Right-handed 310
Helix 49	AF4	C	50	68	Right-handed alpha
Helix 50	AF5	C	68	81	Right-handed alpha
Helix 51	AF6	C	85	89	Right-handed 310
Helix 52	AF7	C	99	102	Right-handed 310
Helix 53	AF8	C	112	118	Right-handed alpha
Helix 54	AF9	C	155	173	Right-handed alpha
Helix 55	AG1	C	184	197	Right-handed alpha
Helix 56	AG2	C	209	230	Right-handed alpha
Helix 57	AG3	C	234	247	Right-handed alpha
Helix 58	AG4	C	260	265	Right-handed alpha
Helix 59	AG5	C	266	269	Right-handed 310
Helix 60	AG6	C	303	307	Right-handed 310
Helix 61	AG7	C	322	329	Right-handed alpha
Helix 62	AG8	C	331	344	Right-handed alpha
Helix 63	AG9	C	403	408	Right-handed alpha
Helix 64	AH1	C	475	480	Right-handed alpha
Helix 65	AH2	C	498	503	Right-handed 310
Helix 66	AH3	D	10	22	Right-handed alpha
Helix 67	AH4	D	26	43	Right-handed alpha
Helix 68	AH5	D	44	48	Right-handed 310
Helix 69	AH6	D	50	68	Right-handed alpha
Helix 70	AH7	D	68	81	Right-handed alpha
Helix 71	AH8	D	85	89	Right-handed 310
Helix 72	AH9	D	99	103	Right-handed 310
Helix 73	AI1	D	107	111	Right-handed 310
Helix 74	AI2	D	112	118	Right-handed alpha
Helix 75	AI3	D	155	173	Right-handed alpha
Helix 76	AI4	D	184	198	Right-handed alpha
Helix 77	AI5	D	209	230	Right-handed alpha
Helix 78	AI6	D	234	247	Right-handed alpha
Helix 79	AI7	D	260	265	Right-handed alpha
Helix 80	AI8	D	302	307	Right-handed 310
Helix 81	AI9	D	322	329	Right-handed alpha
Helix 82	AJ1	D	331	344	Right-handed alpha
Helix 83	AJ2	D	354	361	Right-handed alpha
Helix 84	AJ3	D	403	408	Right-handed alpha
Helix 85	AJ4	D	415	419	Right-handed 310
Helix 86	AJ5	D	498	503	Right-handed 310

There are 17 sheets in PDB entry 7ZPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	141	144	parallel
Strand 3	A	131	134	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	126	128	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	297	298	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	494	495	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	349	first strand
Strand 2	A	389	392	parallel
Strand 3	A	398	402	anti-parallel
Strand 4	A	432	436	anti-parallel
Strand 5	A	442	447	anti-parallel
Strand 6	A	459	464	anti-parallel
Strand 7	A	467	470	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	141	144	parallel
Strand 3	B	131	134	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	126	128	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	B	494	495	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	349	first strand
Strand 2	B	389	392	parallel
Strand 3	B	398	401	anti-parallel
Strand 4	B	433	436	anti-parallel
Strand 5	B	442	446	anti-parallel
Strand 6	B	460	464	anti-parallel
Strand 7	B	467	471	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	141	144	parallel
Strand 3	C	131	134	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	126	128	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	314	first strand
Strand 2	C	494	495	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	349	first strand
Strand 2	C	389	392	parallel
Strand 3	C	398	401	anti-parallel
Strand 4	C	433	436	anti-parallel
Strand 5	C	442	447	anti-parallel
Strand 6	C	459	464	anti-parallel
Strand 7	C	467	471	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	141	144	parallel
Strand 3	D	131	134	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	126	128	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	314	first strand
Strand 2	D	494	495	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	349	first strand
Strand 2	D	389	392	parallel
Strand 3	D	398	402	anti-parallel
Strand 4	D	432	436	anti-parallel
Strand 5	D	442	447	anti-parallel
Strand 6	D	461	464	anti-parallel
Strand 7	D	467	470	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZPF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZPF