Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZPK entry

There are 3 chains in PDB entry 7ZPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 46GLN 1910
B
 U 1 A 59
C
 LEU 16LYS 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 7ZPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 58Right-handed alpha
Helix 2
AA2
A
66 82Right-handed alpha
Helix 3
AA3
A
83 85Right-handed 310
Helix 4
AA4
A
89 93Right-handed 310
Helix 5
AA5
A
102 117Right-handed alpha
Helix 6
AA6
A
126 132Right-handed alpha
Helix 7
AA7
A
134 145Right-handed alpha
Helix 8
AA8
A
152 162Right-handed alpha
Helix 9
AA9
A
165 167Right-handed 310
Helix 10
AB1
A
177 181Right-handed 310
Helix 11
AB2
A
184 196Right-handed alpha
Helix 12
AB3
A
214 231Right-handed alpha
Helix 13
AB4
A
238 247Right-handed alpha
Helix 14
AB5
A
265 284Right-handed alpha
Helix 15
AB6
A
294 314Right-handed alpha
Helix 16
AB7
A
314 334Right-handed alpha
Helix 17
AB8
A
338 361Right-handed alpha
Helix 18
AB9
A
369 373Right-handed 310
Helix 19
AC1
A
374 386Right-handed alpha
Helix 20
AC2
A
450 468Right-handed alpha
Helix 21
AC3
A
498 510Right-handed alpha
Helix 22
AC4
A
511 513Right-handed 310
Helix 23
AC5
A
519 524Right-handed 310
Helix 24
AC6
A
542 551Right-handed alpha
Helix 25
AC7
A
565 592Right-handed alpha
Helix 26
AC8
A
628 641Right-handed alpha
Helix 27
AC9
A
686 706Right-handed alpha
Helix 28
AD1
A
839 859Right-handed alpha
Helix 29
AD2
A
893 902Right-handed alpha
Helix 30
AD3
A
967 976Right-handed alpha
Helix 31
AD4
A
1044 1053Right-handed alpha
Helix 32
AD5
A
1053 1076Right-handed alpha
Helix 33
AD6
A
1293 1302Right-handed alpha
Helix 34
AD7
A
1303 1307Right-handed 310
Helix 35
AD8
A
1313 1335Right-handed alpha
Helix 36
AD9
A
1339 1352Right-handed alpha
Helix 37
AE1
A
1352 1363Right-handed alpha
Helix 38
AE2
A
1364 1368Right-handed 310
Helix 39
AE3
A
1552 1583Right-handed alpha
Helix 40
AE4
A
1648 1657Right-handed alpha
Helix 41
AE5
A
1660 1668Right-handed alpha
Helix 42
AE6
A
1674 1682Right-handed alpha
Helix 43
AE7
A
1695 1716Right-handed alpha
Helix 44
AE8
A
1722 1735Right-handed alpha
Helix 45
AE9
A
1735 1746Right-handed alpha
Helix 46
AF1
A
1747 1752Right-handed alpha
Helix 47
AF2
A
1756 1772Right-handed alpha
Helix 48
AF3
A
1799 1817Right-handed alpha
Helix 49
AF4
A
1820 1842Right-handed alpha
Helix 50
AF5
A
1846 1855Right-handed alpha
Helix 51
AF6
A
1890 1910Right-handed alpha
Helix 52
AF7
C
18 26Right-handed alpha
Helix 53
AF8
C
30 42Right-handed alpha
Helix 54
AF9
C
79 95Right-handed alpha
Helix 55
AG1
C
158 170Right-handed alpha
Helix 56
AG2
C
185 189Right-handed 310
Helix 57
AG3
C
208 225Right-handed alpha
Helix 58
AG4
C
292 304Right-handed alpha
Helix 59
AG5
C
342 364Right-handed alpha
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There are 12 sheets in PDB entry 7ZPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
147 151parallel
Strand 3
A
95 100parallel
Strand 4
A
169 175parallel
Strand 5
A
203 206parallel
Strand 6
A
60 63parallel
Strand 7
A
233 235parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 256first strand
Strand 2
A
559 564parallel
Strand 3
A
533 536parallel
Strand 4
A
444 447parallel
Strand 5
A
515 518parallel
Strand 6
A
476 478parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 656first strand
Strand 2
A
664 668anti-parallel
Strand 3
A
679 680anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 750first strand
Strand 2
A
1547 1551anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 820first strand
Strand 2
A
823 836anti-parallel
Strand 3
A
768 780anti-parallel
Strand 4
A
801 806anti-parallel
Strand 5
A
877 884anti-parallel
Strand 6
A
889 891anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
865 867first strand
Strand 2
A
1385 1387anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
987 992first strand
Strand 2
A
945 951anti-parallel
Strand 3
A
931 934anti-parallel
Strand 4
A
1038 1040anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1859 1861first strand
Strand 2
A
1872 1878anti-parallel
Strand 3
A
1865 1866anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1859 1861first strand
Strand 2
A
1872 1878anti-parallel
Strand 3
A
1882 1888anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 56first strand
Strand 2
C
59 68anti-parallel
Strand 3
C
71 77anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 183first strand
Strand 2
C
190 197anti-parallel
Strand 3
C
200 206anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
308 312first strand
Strand 2
C
322 328anti-parallel
Strand 3
C
334 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il