Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZPM entry

There are 6 chains in PDB entry 7ZPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 202	ARG 716
B	MET 1	ARG 670
C	LYS 41	GLU 120
D	GLU 203	ARG 716
E	MET 1	ARG 670
F	LYS 41	GLU 120

There are104 helices in PDB entry 7ZPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	209	215	Right-handed alpha
Helix 2	AA2	A	216	218	Right-handed 310
Helix 3	AA3	A	225	235	Right-handed alpha
Helix 4	AA4	A	240	249	Right-handed alpha
Helix 5	AA5	A	302	312	Right-handed alpha
Helix 6	AA6	A	330	345	Right-handed alpha
Helix 7	AA7	A	346	351	Right-handed 310
Helix 8	AA8	A	363	370	Right-handed alpha
Helix 9	AA9	A	380	385	Right-handed 310
Helix 10	AB1	A	405	415	Right-handed alpha
Helix 11	AB2	A	433	451	Right-handed alpha
Helix 12	AB3	A	453	476	Right-handed alpha
Helix 13	AB4	A	533	538	Right-handed 310
Helix 14	AB5	A	572	580	Right-handed alpha
Helix 15	AB6	A	582	604	Right-handed alpha
Helix 16	AB7	A	607	613	Right-handed alpha
Helix 17	AB8	A	632	650	Right-handed alpha
Helix 18	AB9	A	652	674	Right-handed alpha
Helix 19	AC1	A	682	692	Right-handed alpha
Helix 20	AC2	A	697	715	Right-handed alpha
Helix 21	AC3	B	5	11	Right-handed 310
Helix 22	AC4	B	17	22	Right-handed 310
Helix 23	AC5	B	35	49	Right-handed alpha
Helix 24	AC6	B	84	99	Right-handed alpha
Helix 25	AC7	B	101	114	Right-handed alpha
Helix 26	AC8	B	119	124	Right-handed 310
Helix 27	AC9	B	138	153	Right-handed alpha
Helix 28	AD1	B	156	161	Right-handed 310
Helix 29	AD2	B	162	174	Right-handed alpha
Helix 30	AD3	B	214	222	Right-handed alpha
Helix 31	AD4	B	245	247	Right-handed 310
Helix 32	AD5	B	248	264	Right-handed alpha
Helix 33	AD6	B	275	292	Right-handed alpha
Helix 34	AD7	B	314	326	Right-handed alpha
Helix 35	AD8	B	330	338	Right-handed alpha
Helix 36	AD9	B	338	345	Right-handed alpha
Helix 37	AE1	B	370	375	Right-handed 310
Helix 38	AE2	B	382	393	Right-handed alpha
Helix 39	AE3	B	412	426	Right-handed alpha
Helix 40	AE4	B	428	433	Right-handed alpha
Helix 41	AE5	B	455	473	Right-handed alpha
Helix 42	AE6	B	518	538	Right-handed alpha
Helix 43	AE7	B	540	560	Right-handed alpha
Helix 44	AE8	B	572	583	Right-handed alpha
Helix 45	AE9	B	590	594	Right-handed 310
Helix 46	AF1	B	607	612	Right-handed alpha
Helix 47	AF2	B	617	625	Right-handed alpha
Helix 48	AF3	C	42	53	Right-handed alpha
Helix 49	AF4	C	60	66	Right-handed 310
Helix 50	AF5	C	93	103	Right-handed alpha
Helix 51	AF6	C	110	115	Right-handed alpha
Helix 52	AF7	C	115	120	Right-handed alpha
Helix 53	AF8	D	209	216	Right-handed alpha
Helix 54	AF9	D	225	235	Right-handed alpha
Helix 55	AG1	D	240	249	Right-handed alpha
Helix 56	AG2	D	302	312	Right-handed alpha
Helix 57	AG3	D	330	345	Right-handed alpha
Helix 58	AG4	D	346	351	Right-handed 310
Helix 59	AG5	D	363	370	Right-handed alpha
Helix 60	AG6	D	380	385	Right-handed 310
Helix 61	AG7	D	405	415	Right-handed alpha
Helix 62	AG8	D	433	451	Right-handed alpha
Helix 63	AG9	D	453	476	Right-handed alpha
Helix 64	AH1	D	533	538	Right-handed 310
Helix 65	AH2	D	572	580	Right-handed alpha
Helix 66	AH3	D	582	603	Right-handed alpha
Helix 67	AH4	D	607	613	Right-handed alpha
Helix 68	AH5	D	632	650	Right-handed alpha
Helix 69	AH6	D	652	674	Right-handed alpha
Helix 70	AH7	D	682	692	Right-handed alpha
Helix 71	AH8	D	697	715	Right-handed alpha
Helix 72	AH9	E	5	11	Right-handed 310
Helix 73	AI1	E	17	22	Right-handed 310
Helix 74	AI2	E	35	49	Right-handed alpha
Helix 75	AI3	E	84	99	Right-handed alpha
Helix 76	AI4	E	101	116	Right-handed alpha
Helix 77	AI5	E	119	124	Right-handed 310
Helix 78	AI6	E	138	153	Right-handed alpha
Helix 79	AI7	E	157	161	Right-handed 310
Helix 80	AI8	E	162	173	Right-handed alpha
Helix 81	AI9	E	174	176	Right-handed 310
Helix 82	AJ1	E	213	221	Right-handed alpha
Helix 83	AJ2	E	248	265	Right-handed alpha
Helix 84	AJ3	E	275	289	Right-handed alpha
Helix 85	AJ4	E	314	326	Right-handed alpha
Helix 86	AJ5	E	330	338	Right-handed alpha
Helix 87	AJ6	E	339	346	Right-handed alpha
Helix 88	AJ7	E	369	373	Right-handed 310
Helix 89	AJ8	E	377	381	Right-handed 310
Helix 90	AJ9	E	382	393	Right-handed alpha
Helix 91	AK1	E	412	426	Right-handed alpha
Helix 92	AK2	E	428	433	Right-handed alpha
Helix 93	AK3	E	455	473	Right-handed alpha
Helix 94	AK4	E	518	538	Right-handed alpha
Helix 95	AK5	E	540	560	Right-handed alpha
Helix 96	AK6	E	572	583	Right-handed alpha
Helix 97	AK7	E	590	594	Right-handed 310
Helix 98	AK8	E	607	612	Right-handed alpha
Helix 99	AK9	E	617	625	Right-handed alpha
Helix 100	AL1	F	42	52	Right-handed alpha
Helix 101	AL2	F	60	66	Right-handed 310
Helix 102	AL3	F	93	103	Right-handed alpha
Helix 103	AL4	F	110	115	Right-handed alpha
Helix 104	AL5	F	115	120	Right-handed alpha

There are 23 sheets in PDB entry 7ZPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	679	680	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	446	453	anti-parallel
Strand 6	B	437	442	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	294	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	517	526	anti-parallel
Strand 4	A	555	571	anti-parallel
Strand 5	A	541	552	anti-parallel
Strand 6	A	317	324	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	294	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	482	490	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	D	353	355	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	B	355	358	anti-parallel
Strand 3	B	367	368	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	631	first strand
Strand 2	A	619	624	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	210	213	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	348	350	parallel
Strand 3	B	400	402	anti-parallel
Strand 4	B	396	397	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	496	498	anti-parallel
Strand 3	B	501	502	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	C	57	59	anti-parallel
Strand 3	C	89	91	anti-parallel
Strand 4	C	78	82	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	679	680	anti-parallel
Strand 3	E	477	486	anti-parallel
Strand 4	E	298	306	anti-parallel
Strand 5	E	446	453	anti-parallel
Strand 6	E	437	442	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	294	first strand
Strand 2	D	496	506	anti-parallel
Strand 3	D	517	526	anti-parallel
Strand 4	D	555	571	anti-parallel
Strand 5	D	541	552	anti-parallel
Strand 6	D	317	324	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	294	first strand
Strand 2	D	496	506	anti-parallel
Strand 3	D	480	490	anti-parallel
Strand 4	D	359	360	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	392	first strand
Strand 2	E	355	358	anti-parallel
Strand 3	E	367	368	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	628	631	first strand
Strand 2	D	619	623	anti-parallel
Strand 3	E	2	3	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	57	first strand
Strand 2	E	64	67	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	130	first strand
Strand 2	E	135	137	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	182	first strand
Strand 2	E	209	212	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	224	first strand
Strand 2	E	347	350	parallel
Strand 3	E	400	403	anti-parallel
Strand 4	E	396	397	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	489	491	first strand
Strand 2	E	496	498	anti-parallel
Strand 3	E	501	502	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	667	668	first strand
Strand 2	F	57	59	anti-parallel
Strand 3	F	89	91	anti-parallel
Strand 4	F	78	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZPM