Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZR5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ZR5 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7ZR5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 10	GLU 692
B	GLU 10	GLU 692
C	MET 1	VAL 12
C	ASP 14	ARG 266
K	THR 521	ILE 724
P	GLY 23	HIS 481

There are 86 helices in PDB entry 7ZR5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	31	Right-handed alpha
Helix 2	AA2	A	37	61	Right-handed alpha
Helix 3	AA3	A	94	101	Right-handed alpha
Helix 4	AA4	A	109	115	Right-handed alpha
Helix 5	AA5	A	133	138	Right-handed 310
Helix 6	AA6	A	194	205	Right-handed alpha
Helix 7	AA7	A	287	291	Right-handed 310
Helix 8	AA8	A	292	296	Right-handed 310
Helix 9	AA9	A	297	307	Right-handed alpha
Helix 10	AB1	A	399	420	Right-handed alpha
Helix 11	AB2	A	424	433	Right-handed alpha
Helix 12	AB3	A	433	444	Right-handed alpha
Helix 13	AB4	A	447	452	Right-handed alpha
Helix 14	AB5	A	469	474	Right-handed alpha
Helix 15	AB6	A	490	496	Right-handed alpha
Helix 16	AB7	A	515	523	Right-handed alpha
Helix 17	AB8	A	546	560	Right-handed alpha
Helix 18	AB9	A	561	572	Right-handed alpha
Helix 19	AC1	A	599	609	Right-handed alpha
Helix 20	AC2	A	613	618	Right-handed alpha
Helix 21	AC3	A	632	645	Right-handed alpha
Helix 22	AC4	A	648	665	Right-handed alpha
Helix 23	AC5	A	672	688	Right-handed alpha
Helix 24	AC6	B	21	31	Right-handed alpha
Helix 25	AC7	B	38	59	Right-handed alpha
Helix 26	AC8	B	61	66	Right-handed 310
Helix 27	AC9	B	94	103	Right-handed alpha
Helix 28	AD1	B	108	117	Right-handed alpha
Helix 29	AD2	B	133	140	Right-handed 310
Helix 30	AD3	B	194	205	Right-handed alpha
Helix 31	AD4	B	298	307	Right-handed alpha
Helix 32	AD5	B	398	420	Right-handed alpha
Helix 33	AD6	B	425	431	Right-handed alpha
Helix 34	AD7	B	433	443	Right-handed alpha
Helix 35	AD8	B	449	453	Right-handed 310
Helix 36	AD9	B	468	475	Right-handed alpha
Helix 37	AE1	B	490	496	Right-handed alpha
Helix 38	AE2	B	499	504	Right-handed alpha
Helix 39	AE3	B	505	507	Right-handed 310
Helix 40	AE4	B	516	525	Right-handed alpha
Helix 41	AE5	B	546	560	Right-handed alpha
Helix 42	AE6	B	560	571	Right-handed alpha
Helix 43	AE7	B	599	608	Right-handed alpha
Helix 44	AE8	B	616	621	Right-handed alpha
Helix 45	AE9	B	632	645	Right-handed alpha
Helix 46	AF1	B	648	666	Right-handed alpha
Helix 47	AF2	B	672	688	Right-handed alpha
Helix 48	AF3	C	4	8	Right-handed 310
Helix 49	AF4	C	26	72	Right-handed alpha
Helix 50	AF5	C	78	112	Right-handed alpha
Helix 51	AF6	C	115	119	Right-handed alpha
Helix 52	AF7	C	139	164	Right-handed alpha
Helix 53	AF8	C	167	182	Right-handed alpha
Helix 54	AF9	C	183	201	Right-handed alpha
Helix 55	AG1	C	202	227	Right-handed alpha
Helix 56	AG2	C	234	243	Right-handed alpha
Helix 57	AG3	C	245	265	Right-handed alpha
Helix 58	AG4	K	537	543	Right-handed alpha
Helix 59	AG5	K	549	568	Right-handed alpha
Helix 60	AG6	K	569	571	Right-handed 310
Helix 61	AG7	K	578	581	Right-handed 310
Helix 62	AG8	K	634	652	Right-handed alpha
Helix 63	AG9	K	661	671	Right-handed alpha
Helix 64	AH1	K	686	697	Right-handed alpha
Helix 65	AH2	K	706	719	Right-handed alpha
Helix 66	AH3	P	28	30	Right-handed 310
Helix 67	AH4	P	31	36	Right-handed alpha
Helix 68	AH5	P	36	41	Right-handed alpha
Helix 69	AH6	P	43	58	Right-handed alpha
Helix 70	AH7	P	61	74	Right-handed alpha
Helix 71	AH8	P	78	91	Right-handed alpha
Helix 72	AH9	P	95	110	Right-handed alpha
Helix 73	AI1	P	113	121	Right-handed alpha
Helix 74	AI2	P	133	151	Right-handed alpha
Helix 75	AI3	P	187	200	Right-handed alpha
Helix 76	AI4	P	205	221	Right-handed alpha
Helix 77	AI5	P	246	258	Right-handed alpha
Helix 78	AI6	P	278	293	Right-handed alpha
Helix 79	AI7	P	302	305	Right-handed 310
Helix 80	AI8	P	306	311	Right-handed alpha
Helix 81	AI9	P	314	323	Right-handed alpha
Helix 82	AJ1	P	324	336	Right-handed alpha
Helix 83	AJ2	P	362	368	Right-handed alpha
Helix 84	AJ3	P	379	387	Right-handed alpha
Helix 85	AJ4	P	407	419	Right-handed alpha
Helix 86	AJ5	P	438	440	Right-handed 310

There are 17 sheets in PDB entry 7ZR5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	B	165	169	anti-parallel
Strand 3	B	155	159	anti-parallel
Strand 4	B	142	147	anti-parallel
Strand 5	B	179	184	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	B	104	105	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	83	85	anti-parallel
Strand 3	A	178	185	anti-parallel
Strand 4	A	140	148	anti-parallel
Strand 5	A	155	159	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	18	19	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	324	first strand
Strand 2	A	328	334	anti-parallel
Strand 3	A	379	383	anti-parallel
Strand 4	A	353	357	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	467	468	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	483	487	parallel
Strand 3	A	531	535	parallel
Strand 4	A	527	528	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	580	first strand
Strand 2	A	626	628	parallel
Strand 3	A	589	590	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	213	215	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	317	319	anti-parallel
Strand 3	C	127	128	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	325	first strand
Strand 2	C	120	124	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	511	513	anti-parallel
Strand 3	B	483	487	parallel
Strand 4	B	531	535	parallel
Strand 5	B	527	528	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	575	580	first strand
Strand 2	B	624	628	parallel
Strand 3	B	589	592	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	535	536	first strand
Strand 2	K	583	584	anti-parallel
Strand 3	K	590	591	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	226	229	first strand
Strand 2	P	341	344	parallel
Strand 3	P	348	351	anti-parallel
Strand 4	P	422	424	parallel
Strand 5	P	442	445	parallel
Strand 6	P	434	437	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	297	299	first strand
Strand 2	P	266	268	parallel
Strand 3	P	237	240	parallel
Strand 4	P	459	464	anti-parallel
Strand 5	P	472	476	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	388	389	first strand
Strand 2	P	404	406	parallel
Strand 3	P	396	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ZR5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZR5