Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZRD entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 7ZRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 557
C
 MET 1GLU 190
D
 MET 1PHE 29
B
 ALA 7GLU 161
B
 ALA 163VAL 682
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 7ZRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 32Right-handed alpha
Helix 2
AA2
A
41 51Right-handed alpha
Helix 3
AA3
A
58 83Right-handed alpha
Helix 4
AA4
A
84 87Right-handed 310
Helix 5
AA5
A
98 111Right-handed alpha
Helix 6
AA6
A
119 123Right-handed 310
Helix 7
AA7
A
125 132Right-handed alpha
Helix 8
AA8
A
132 157Right-handed alpha
Helix 9
AA9
A
165 177Right-handed alpha
Helix 10
AB1
A
177 192Right-handed alpha
Helix 11
AB2
A
218 229Right-handed alpha
Helix 12
AB3
A
248 274Right-handed alpha
Helix 13
AB4
A
276 304Right-handed alpha
Helix 14
AB5
A
307 312Right-handed alpha
Helix 15
AB6
A
328 342Right-handed alpha
Helix 16
AB7
A
350 354Right-handed 310
Helix 17
AB8
A
355 368Right-handed alpha
Helix 18
AB9
A
379 399Right-handed alpha
Helix 19
AC1
A
410 437Right-handed alpha
Helix 20
AC2
A
438 443Right-handed alpha
Helix 21
AC3
A
449 465Right-handed alpha
Helix 22
AC4
A
478 495Right-handed alpha
Helix 23
AC5
A
496 508Right-handed alpha
Helix 24
AC6
A
523 550Right-handed alpha
Helix 25
AC7
A
550 557Right-handed alpha
Helix 26
AC8
C
3 21Right-handed alpha
Helix 27
AC9
C
21 34Right-handed alpha
Helix 28
AD1
C
91 109Right-handed alpha
Helix 29
AD2
C
133 140Right-handed alpha
Helix 30
AD3
C
140 149Right-handed alpha
Helix 31
AD4
C
151 162Right-handed alpha
Helix 32
AD5
C
178 188Right-handed alpha
Helix 33
AD6
D
2 25Right-handed alpha
Helix 34
AD7
B
11 20Right-handed alpha
Helix 35
AD8
B
33 56Right-handed alpha
Helix 36
AD9
B
63 102Right-handed alpha
Helix 37
AE1
B
155 160Right-handed alpha
Helix 38
AE2
B
170 174Right-handed 310
Helix 39
AE3
B
198 209Right-handed alpha
Helix 40
AE4
B
215 244Right-handed alpha
Helix 41
AE5
B
245 247Right-handed 310
Helix 42
AE6
B
251 263Right-handed alpha
Helix 43
AE7
B
264 285Right-handed alpha
Helix 44
AE8
B
291 299Right-handed alpha
Helix 45
AE9
B
329 341Right-handed alpha
Helix 46
AF1
B
346 361Right-handed alpha
Helix 47
AF2
B
398 408Right-handed alpha
Helix 48
AF3
B
416 427Right-handed alpha
Helix 49
AF4
B
452 463Right-handed alpha
Helix 50
AF5
B
474 486Right-handed alpha
Helix 51
AF6
B
495 509Right-handed alpha
Helix 52
AF7
B
522 529Right-handed alpha
Helix 53
AF8
B
538 543Right-handed alpha
Helix 54
AF9
B
556 582Right-handed alpha
Helix 55
AG1
B
582 595Right-handed alpha
Helix 56
AG2
B
599 606Right-handed 310
Helix 57
AG3
B
612 631Right-handed alpha
Helix 58
AG4
B
631 638Right-handed alpha
Helix 59
AG5
B
645 680Right-handed alpha
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There are 9 sheets in PDB entry 7ZRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
211 214anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
407 408anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
48 52anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
175 177anti-parallel
Strand 3
C
163 164anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
118 119anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
187 191anti-parallel
Strand 3
B
144 154anti-parallel
Strand 4
B
181 182anti-parallel
Strand 5
B
138 139anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
187 191anti-parallel
Strand 3
B
144 154anti-parallel
Strand 4
B
164 168anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 288first strand
Strand 2
B
549 550anti-parallel
Strand 3
B
531 535parallel
Strand 4
B
513 517parallel
Strand 5
B
303 305parallel
Strand 6
B
466 470parallel
Strand 7
B
489 491parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 321first strand
Strand 2
B
438 447anti-parallel
Strand 3
B
429 435anti-parallel
Strand 4
B
392 397anti-parallel
Strand 5
B
386 387anti-parallel
Strand 6
B
373 374anti-parallel
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