Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZRI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZRI entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 7ZRI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 557
C
 MET 1GLU 190
D
 MET 1GLU 27
B
 ALA 7GLU 161
B
 ALA 163VAL 682
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 7ZRI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 32Right-handed alpha
Helix 2
AA2
A
39 51Right-handed alpha
Helix 3
AA3
A
58 83Right-handed alpha
Helix 4
AA4
A
98 111Right-handed alpha
Helix 5
AA5
A
125 132Right-handed alpha
Helix 6
AA6
A
132 157Right-handed alpha
Helix 7
AA7
A
165 177Right-handed alpha
Helix 8
AA8
A
178 193Right-handed alpha
Helix 9
AA9
A
218 229Right-handed alpha
Helix 10
AB1
A
248 274Right-handed alpha
Helix 11
AB2
A
277 305Right-handed alpha
Helix 12
AB3
A
307 313Right-handed alpha
Helix 13
AB4
A
328 342Right-handed alpha
Helix 14
AB5
A
350 354Right-handed 310
Helix 15
AB6
A
355 368Right-handed alpha
Helix 16
AB7
A
379 399Right-handed alpha
Helix 17
AB8
A
410 435Right-handed alpha
Helix 18
AB9
A
438 443Right-handed alpha
Helix 19
AC1
A
449 465Right-handed alpha
Helix 20
AC2
A
478 495Right-handed alpha
Helix 21
AC3
A
496 508Right-handed alpha
Helix 22
AC4
A
524 540Right-handed alpha
Helix 23
AC5
A
543 549Right-handed alpha
Helix 24
AC6
A
550 557Right-handed alpha
Helix 25
AC7
C
3 20Right-handed alpha
Helix 26
AC8
C
21 34Right-handed alpha
Helix 27
AC9
C
34 39Right-handed alpha
Helix 28
AD1
C
91 109Right-handed alpha
Helix 29
AD2
C
133 138Right-handed alpha
Helix 30
AD3
C
140 149Right-handed alpha
Helix 31
AD4
C
151 162Right-handed alpha
Helix 32
AD5
C
177 190Right-handed alpha
Helix 33
AD6
D
5 25Right-handed alpha
Helix 34
AD7
B
11 23Right-handed alpha
Helix 35
AD8
B
24 26Right-handed 310
Helix 36
AD9
B
33 55Right-handed alpha
Helix 37
AE1
B
61 98Right-handed alpha
Helix 38
AE2
B
155 160Right-handed alpha
Helix 39
AE3
B
198 208Right-handed alpha
Helix 40
AE4
B
215 237Right-handed alpha
Helix 41
AE5
B
239 247Right-handed alpha
Helix 42
AE6
B
251 263Right-handed alpha
Helix 43
AE7
B
264 269Right-handed alpha
Helix 44
AE8
B
270 284Right-handed alpha
Helix 45
AE9
B
291 299Right-handed alpha
Helix 46
AF1
B
329 341Right-handed alpha
Helix 47
AF2
B
346 361Right-handed alpha
Helix 48
AF3
B
367 371Right-handed 310
Helix 49
AF4
B
397 409Right-handed alpha
Helix 50
AF5
B
413 427Right-handed alpha
Helix 51
AF6
B
453 464Right-handed alpha
Helix 52
AF7
B
474 486Right-handed alpha
Helix 53
AF8
B
495 510Right-handed alpha
Helix 54
AF9
B
522 528Right-handed alpha
Helix 55
AG1
B
539 546Right-handed alpha
Helix 56
AG2
B
556 582Right-handed alpha
Helix 57
AG3
B
582 595Right-handed alpha
Helix 58
AG4
B
599 606Right-handed 310
Helix 59
AG5
B
612 638Right-handed alpha
Helix 60
AG6
B
648 679Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7ZRI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
211 214anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
407 408anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
48 52anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 164first strand
Strand 2
C
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
187 190anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
180 182anti-parallel
Strand 3
B
151 154anti-parallel
Strand 4
B
165 167anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
548 550anti-parallel
Strand 3
B
531 535parallel
Strand 4
B
513 515parallel
Strand 5
B
303 306parallel
Strand 6
B
466 470parallel
Strand 7
B
489 491parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 323first strand
Strand 2
B
438 447anti-parallel
Strand 3
B
429 435anti-parallel
Strand 4
B
393 396anti-parallel
Strand 5
B
383 386anti-parallel
Strand 6
B
374 378anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il