Analysis of interatomic Contacts of Structural Units in PDB entry:
8A04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A04 entry

There are 3 chains in PDB entry 8A04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	MET 1	VAL 239
H	MET 1	VAL 239
G	MET 1	VAL 239

There are 9 helices in PDB entry 8A04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	31	35	Right-handed 310
Helix 2	AA2	I	60	66	Right-handed alpha
Helix 3	AA3	I	178	190	Right-handed alpha
Helix 4	AA4	H	31	35	Right-handed 310
Helix 5	AA5	H	60	66	Right-handed alpha
Helix 6	AA6	H	178	190	Right-handed alpha
Helix 7	AA7	G	31	35	Right-handed 310
Helix 8	AA8	G	60	68	Right-handed alpha
Helix 9	AA9	G	178	190	Right-handed alpha

There are 18 sheets in PDB entry 8A04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	7	first strand
Strand 2	I	114	120	anti-parallel
Strand 3	I	23	28	anti-parallel
Strand 4	I	82	87	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	17	first strand
Strand 2	I	101	107	anti-parallel
Strand 3	I	39	45	anti-parallel
Strand 4	I	52	59	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	93	94	first strand
Strand 2	I	125	126	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	137	first strand
Strand 2	I	229	238	anti-parallel
Strand 3	I	153	157	anti-parallel
Strand 4	I	208	211	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	143	146	first strand
Strand 2	I	216	223	anti-parallel
Strand 3	I	162	169	anti-parallel
Strand 4	I	174	177	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	194	195	first strand
Strand 2	I	201	202	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	7	first strand
Strand 2	H	114	120	anti-parallel
Strand 3	H	23	28	anti-parallel
Strand 4	H	82	87	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	17	first strand
Strand 2	H	101	107	anti-parallel
Strand 3	H	39	45	anti-parallel
Strand 4	H	52	59	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	93	94	first strand
Strand 2	H	125	126	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	137	first strand
Strand 2	H	229	238	anti-parallel
Strand 3	H	153	157	anti-parallel
Strand 4	H	208	211	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	143	146	first strand
Strand 2	H	216	223	anti-parallel
Strand 3	H	162	169	anti-parallel
Strand 4	H	174	177	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	195	first strand
Strand 2	H	201	202	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	7	first strand
Strand 2	G	114	120	anti-parallel
Strand 3	G	23	28	anti-parallel
Strand 4	G	82	87	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	17	first strand
Strand 2	G	101	107	anti-parallel
Strand 3	G	39	45	anti-parallel
Strand 4	G	52	59	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	94	first strand
Strand 2	G	125	126	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	137	first strand
Strand 2	G	229	238	anti-parallel
Strand 3	G	151	157	anti-parallel
Strand 4	G	208	212	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	143	147	first strand
Strand 2	G	216	223	anti-parallel
Strand 3	G	162	169	anti-parallel
Strand 4	G	174	177	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	195	first strand
Strand 2	G	201	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A04

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A04