Analysis of interatomic Contacts of Structural Units in PDB entry:
8A0C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A0C entry

There are 2 chains in PDB entry 8A0C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 0	SER 1115
B	VAL 0	SER 1115

There are119 helices in PDB entry 8A0C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	38	50	Right-handed alpha
Helix 3	AA3	A	59	66	Right-handed alpha
Helix 4	AA4	A	67	69	Right-handed 310
Helix 5	AA5	A	103	108	Right-handed 310
Helix 6	AA6	A	113	131	Right-handed alpha
Helix 7	AA7	A	138	149	Right-handed alpha
Helix 8	AA8	A	152	156	Right-handed 310
Helix 9	AA9	A	161	165	Right-handed 310
Helix 10	AB1	A	176	180	Right-handed 310
Helix 11	AB2	A	184	188	Right-handed 310
Helix 12	AB3	A	205	211	Right-handed alpha
Helix 13	AB4	A	213	224	Right-handed alpha
Helix 14	AB5	A	233	238	Right-handed 310
Helix 15	AB6	A	239	249	Right-handed alpha
Helix 16	AB7	A	263	271	Right-handed 310
Helix 17	AB8	A	280	289	Right-handed alpha
Helix 18	AB9	A	299	304	Right-handed alpha
Helix 19	AC1	A	324	334	Right-handed alpha
Helix 20	AC2	A	341	354	Right-handed alpha
Helix 21	AC3	A	355	358	Right-handed 310
Helix 22	AC4	A	361	371	Right-handed alpha
Helix 23	AC5	A	398	414	Right-handed alpha
Helix 24	AC6	A	418	424	Right-handed alpha
Helix 25	AC7	A	424	443	Right-handed alpha
Helix 26	AC8	A	443	448	Right-handed alpha
Helix 27	AC9	A	455	468	Right-handed alpha
Helix 28	AD1	A	470	488	Right-handed alpha
Helix 29	AD2	A	492	505	Right-handed alpha
Helix 30	AD3	A	518	530	Right-handed alpha
Helix 31	AD4	A	531	536	Right-handed 310
Helix 32	AD5	A	541	545	Right-handed alpha
Helix 33	AD6	A	551	561	Right-handed alpha
Helix 34	AD7	A	579	585	Right-handed alpha
Helix 35	AD8	A	598	607	Right-handed alpha
Helix 36	AD9	A	608	611	Right-handed 310
Helix 37	AE1	A	612	633	Right-handed alpha
Helix 38	AE2	A	637	670	Right-handed alpha
Helix 39	AE3	A	679	696	Right-handed alpha
Helix 40	AE4	A	707	713	Right-handed alpha
Helix 41	AE5	A	714	716	Right-handed 310
Helix 42	AE6	A	721	726	Right-handed 310
Helix 43	AE7	A	736	745	Right-handed alpha
Helix 44	AE8	A	747	755	Right-handed alpha
Helix 45	AE9	A	756	762	Right-handed 310
Helix 46	AF1	A	769	781	Right-handed alpha
Helix 47	AF2	A	782	808	Right-handed alpha
Helix 48	AF3	A	823	838	Right-handed alpha
Helix 49	AF4	A	870	872	Right-handed 310
Helix 50	AF5	A	873	878	Right-handed alpha
Helix 51	AF6	A	904	922	Right-handed alpha
Helix 52	AF7	A	928	947	Right-handed alpha
Helix 53	AF8	A	950	956	Right-handed alpha
Helix 54	AF9	A	957	959	Right-handed 310
Helix 55	AG1	A	978	984	Right-handed alpha
Helix 56	AG2	A	987	993	Right-handed alpha
Helix 57	AG3	A	997	1004	Right-handed alpha
Helix 58	AG4	A	1006	1017	Right-handed alpha
Helix 59	AG5	A	1038	1042	Right-handed 310
Helix 60	AG6	A	1067	1069	Right-handed 310
Helix 61	AG7	B	12	26	Right-handed alpha
Helix 62	AG8	B	38	50	Right-handed alpha
Helix 63	AG9	B	59	66	Right-handed alpha
Helix 64	AH1	B	67	69	Right-handed 310
Helix 65	AH2	B	103	108	Right-handed 310
Helix 66	AH3	B	113	131	Right-handed alpha
Helix 67	AH4	B	138	149	Right-handed alpha
Helix 68	AH5	B	152	156	Right-handed 310
Helix 69	AH6	B	161	165	Right-handed 310
Helix 70	AH7	B	176	180	Right-handed 310
Helix 71	AH8	B	184	188	Right-handed 310
Helix 72	AH9	B	205	211	Right-handed alpha
Helix 73	AI1	B	213	224	Right-handed alpha
Helix 74	AI2	B	233	238	Right-handed 310
Helix 75	AI3	B	239	249	Right-handed alpha
Helix 76	AI4	B	263	271	Right-handed 310
Helix 77	AI5	B	280	289	Right-handed alpha
Helix 78	AI6	B	299	307	Right-handed alpha
Helix 79	AI7	B	324	334	Right-handed alpha
Helix 80	AI8	B	341	354	Right-handed alpha
Helix 81	AI9	B	355	357	Right-handed 310
Helix 82	AJ1	B	361	371	Right-handed alpha
Helix 83	AJ2	B	399	412	Right-handed alpha
Helix 84	AJ3	B	418	424	Right-handed alpha
Helix 85	AJ4	B	424	443	Right-handed alpha
Helix 86	AJ5	B	443	448	Right-handed alpha
Helix 87	AJ6	B	455	468	Right-handed alpha
Helix 88	AJ7	B	470	488	Right-handed alpha
Helix 89	AJ8	B	492	505	Right-handed alpha
Helix 90	AJ9	B	518	530	Right-handed alpha
Helix 91	AK1	B	531	536	Right-handed 310
Helix 92	AK2	B	541	545	Right-handed alpha
Helix 93	AK3	B	551	561	Right-handed alpha
Helix 94	AK4	B	579	584	Right-handed alpha
Helix 95	AK5	B	598	607	Right-handed alpha
Helix 96	AK6	B	612	633	Right-handed alpha
Helix 97	AK7	B	637	670	Right-handed alpha
Helix 98	AK8	B	680	696	Right-handed alpha
Helix 99	AK9	B	707	713	Right-handed alpha
Helix 100	AL1	B	714	716	Right-handed 310
Helix 101	AL2	B	721	726	Right-handed 310
Helix 102	AL3	B	736	745	Right-handed alpha
Helix 103	AL4	B	747	755	Right-handed alpha
Helix 104	AL5	B	756	762	Right-handed 310
Helix 105	AL6	B	769	781	Right-handed alpha
Helix 106	AL7	B	782	808	Right-handed alpha
Helix 107	AL8	B	823	838	Right-handed alpha
Helix 108	AL9	B	869	872	Right-handed 310
Helix 109	AM1	B	873	878	Right-handed alpha
Helix 110	AM2	B	904	922	Right-handed alpha
Helix 111	AM3	B	928	945	Right-handed alpha
Helix 112	AM4	B	950	956	Right-handed alpha
Helix 113	AM5	B	957	959	Right-handed 310
Helix 114	AM6	B	978	984	Right-handed alpha
Helix 115	AM7	B	987	993	Right-handed alpha
Helix 116	AM8	B	997	1004	Right-handed alpha
Helix 117	AM9	B	1006	1021	Right-handed alpha
Helix 118	AN1	B	1038	1042	Right-handed 310
Helix 119	AN2	B	1067	1071	Right-handed 310

There are 21 sheets in PDB entry 8A0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	30	36	parallel
Strand 3	A	2	7	parallel
Strand 4	A	71	74	parallel
Strand 5	A	90	93	parallel
Strand 6	A	132	136	parallel
Strand 7	A	157	158	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	226	230	parallel
Strand 3	A	190	195	parallel
Strand 4	A	273	276	parallel
Strand 5	A	293	296	parallel
Strand 6	A	320	322	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	540	first strand
Strand 2	A	508	513	parallel
Strand 3	A	382	385	parallel
Strand 4	A	568	572	parallel
Strand 5	A	588	591	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	394	first strand
Strand 2	A	489	491	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	704	first strand
Strand 2	A	673	677	parallel
Strand 3	A	814	817	parallel
Strand 4	A	843	847	parallel
Strand 5	A	858	862	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	821	first strand
Strand 2	A	849	850	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	888	891	first strand
Strand 2	A	894	897	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	961	962	first strand
Strand 2	A	971	972	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1082	1085	first strand
Strand 2	A	1050	1054	anti-parallel
Strand 3	A	1112	1114	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1058	1061	first strand
Strand 2	A	1071	1077	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1087	1090	first strand
Strand 2	A	1096	1100	anti-parallel
Strand 3	A	1103	1106	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	30	36	parallel
Strand 3	B	2	6	parallel
Strand 4	B	71	74	parallel
Strand 5	B	90	93	parallel
Strand 6	B	132	136	parallel
Strand 7	B	157	158	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	226	230	parallel
Strand 3	B	190	194	parallel
Strand 4	B	273	276	parallel
Strand 5	B	292	296	parallel
Strand 6	B	320	322	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	540	first strand
Strand 2	B	508	513	parallel
Strand 3	B	380	385	parallel
Strand 4	B	565	572	parallel
Strand 5	B	588	591	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	394	first strand
Strand 2	B	489	491	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	704	first strand
Strand 2	B	673	677	parallel
Strand 3	B	814	817	parallel
Strand 4	B	843	847	parallel
Strand 5	B	858	862	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	821	first strand
Strand 2	B	849	850	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	888	891	first strand
Strand 2	B	894	897	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	961	962	first strand
Strand 2	B	971	972	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1082	1085	first strand
Strand 2	B	1050	1054	anti-parallel
Strand 3	B	1112	1114	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1087	1090	first strand
Strand 2	B	1096	1100	anti-parallel
Strand 3	B	1103	1106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A0C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A0C