Analysis of interatomic Contacts of Structural Units in PDB entry:
8A0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A0E entry

There are 7 chains in PDB entry 8A0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 8	MET 363
B	GLU 8	MET 363
C	PRO 10	TYR 176
C	LYS 178	MET 363
D	SER 28	TYR 176
D	LYS 178	MET 363
E	SER 15	LYS 150

There are 69 helices in PDB entry 8A0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	18	Right-handed alpha
Helix 2	AA2	A	35	39	Right-handed 310
Helix 3	AA3	A	41	48	Right-handed alpha
Helix 4	AA4	A	49	52	Right-handed 310
Helix 5	AA5	A	55	74	Right-handed alpha
Helix 6	AA6	A	112	122	Right-handed alpha
Helix 7	AA7	A	131	142	Right-handed alpha
Helix 8	AA8	A	154	161	Right-handed alpha
Helix 9	AA9	A	173	197	Right-handed alpha
Helix 10	AB1	A	202	215	Right-handed alpha
Helix 11	AB2	A	219	227	Right-handed alpha
Helix 12	AB3	A	239	249	Right-handed alpha
Helix 13	AB4	A	259	272	Right-handed alpha
Helix 14	AB5	A	284	296	Right-handed alpha
Helix 15	AB6	A	320	327	Right-handed alpha
Helix 16	AB7	A	342	354	Right-handed alpha
Helix 17	AB8	A	359	363	Right-handed 310
Helix 18	AB9	B	10	18	Right-handed alpha
Helix 19	AC1	B	35	39	Right-handed 310
Helix 20	AC2	B	41	46	Right-handed alpha
Helix 21	AC3	B	47	52	Right-handed 310
Helix 22	AC4	B	53	74	Right-handed alpha
Helix 23	AC5	B	112	122	Right-handed alpha
Helix 24	AC6	B	132	141	Right-handed alpha
Helix 25	AC7	B	154	161	Right-handed alpha
Helix 26	AC8	B	173	196	Right-handed alpha
Helix 27	AC9	B	202	215	Right-handed alpha
Helix 28	AD1	B	219	227	Right-handed alpha
Helix 29	AD2	B	239	249	Right-handed alpha
Helix 30	AD3	B	259	272	Right-handed alpha
Helix 31	AD4	B	284	296	Right-handed alpha
Helix 32	AD5	B	320	327	Right-handed alpha
Helix 33	AD6	B	342	355	Right-handed alpha
Helix 34	AD7	B	359	363	Right-handed 310
Helix 35	AD8	C	11	18	Right-handed alpha
Helix 36	AD9	C	35	39	Right-handed 310
Helix 37	AE1	C	41	48	Right-handed alpha
Helix 38	AE2	C	54	74	Right-handed alpha
Helix 39	AE3	C	84	89	Right-handed alpha
Helix 40	AE4	C	112	122	Right-handed alpha
Helix 41	AE5	C	131	141	Right-handed alpha
Helix 42	AE6	C	154	161	Right-handed alpha
Helix 43	AE7	C	174	197	Right-handed alpha
Helix 44	AE8	C	202	215	Right-handed alpha
Helix 45	AE9	C	219	227	Right-handed alpha
Helix 46	AF1	C	239	249	Right-handed alpha
Helix 47	AF2	C	259	272	Right-handed alpha
Helix 48	AF3	C	284	296	Right-handed alpha
Helix 49	AF4	C	320	327	Right-handed alpha
Helix 50	AF5	C	342	354	Right-handed alpha
Helix 51	AF6	C	358	362	Right-handed 310
Helix 52	AF7	D	35	39	Right-handed 310
Helix 53	AF8	D	41	48	Right-handed alpha
Helix 54	AF9	D	49	52	Right-handed 310
Helix 55	AG1	D	53	74	Right-handed alpha
Helix 56	AG2	D	84	89	Right-handed alpha
Helix 57	AG3	D	112	122	Right-handed alpha
Helix 58	AG4	D	132	141	Right-handed alpha
Helix 59	AG5	D	154	161	Right-handed alpha
Helix 60	AG6	D	174	197	Right-handed alpha
Helix 61	AG7	D	202	215	Right-handed alpha
Helix 62	AG8	D	219	227	Right-handed alpha
Helix 63	AG9	D	239	249	Right-handed alpha
Helix 64	AH1	D	259	272	Right-handed alpha
Helix 65	AH2	D	284	296	Right-handed alpha
Helix 66	AH3	D	320	327	Right-handed alpha
Helix 67	AH4	D	342	355	Right-handed alpha
Helix 68	AH5	D	356	363	Right-handed 310
Helix 69	AH6	E	120	128	Right-handed alpha

There are 12 sheets in PDB entry 8A0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	127	129	parallel
Strand 3	A	98	103	parallel
Strand 4	A	276	281	parallel
Strand 5	A	302	306	parallel
Strand 6	A	337	339	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	169	172	anti-parallel
Strand 3	A	163	166	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	127	129	parallel
Strand 3	B	98	103	parallel
Strand 4	B	276	281	parallel
Strand 5	B	302	306	parallel
Strand 6	B	337	339	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	B	163	166	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	232	first strand
Strand 2	C	127	129	parallel
Strand 3	C	98	103	parallel
Strand 4	C	276	281	parallel
Strand 5	C	302	307	parallel
Strand 6	C	337	340	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	169	172	anti-parallel
Strand 3	C	163	166	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	127	129	parallel
Strand 3	D	98	103	parallel
Strand 4	D	276	281	parallel
Strand 5	D	302	306	parallel
Strand 6	D	337	339	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	169	172	anti-parallel
Strand 3	D	163	166	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	21	first strand
Strand 2	E	78	82	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	32	first strand
Strand 2	E	37	45	anti-parallel
Strand 3	E	55	62	anti-parallel
Strand 4	E	68	74	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	134	139	anti-parallel
Strand 3	E	144	145	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	134	139	anti-parallel
Strand 3	E	149	150	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A0E