Analysis of interatomic Contacts of Structural Units in PDB entry:
8A0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A0J entry

There are 2 chains in PDB entry 8A0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1039ASN 1261
B
 VAL 1046ASN 1262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8A0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1039 1051Right-handed alpha
Helix 2
AA2
A
1132 1140Right-handed alpha
Helix 3
AA3
A
1140 1159Right-handed alpha
Helix 4
AA4
A
1250 1261Right-handed alpha
Helix 5
AA5
B
1132 1140Right-handed alpha
Helix 6
AA6
B
1140 1159Right-handed alpha
Helix 7
AA7
B
1250 1261Right-handed alpha
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There are 4 sheets in PDB entry 8A0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1131first strand
Strand 2
A
1098 1102anti-parallel
Strand 3
A
1087 1093anti-parallel
Strand 4
A
1076 1082anti-parallel
Strand 5
A
1066 1073anti-parallel
Strand 6
A
1057 1060anti-parallel
Strand 7
A
1166 1167anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1188 1193first strand
Strand 2
A
1199 1204anti-parallel
Strand 3
A
1208 1213anti-parallel
Strand 4
A
1217 1223anti-parallel
Strand 5
A
1229 1236anti-parallel
Strand 6
A
1241 1243anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1128 1131first strand
Strand 2
B
1098 1102anti-parallel
Strand 3
B
1087 1093anti-parallel
Strand 4
B
1076 1082anti-parallel
Strand 5
B
1066 1073anti-parallel
Strand 6
B
1057 1060anti-parallel
Strand 7
B
1166 1167anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1188 1193first strand
Strand 2
B
1199 1204anti-parallel
Strand 3
B
1208 1213anti-parallel
Strand 4
B
1217 1223anti-parallel
Strand 5
B
1229 1236anti-parallel
Strand 6
B
1241 1244anti-parallel
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