Analysis of interatomic Contacts of Structural Units in PDB entry:
8A0Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A0Y entry

There are 2 chains in PDB entry 8A0Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 35	GLY 608
B	ALA 35	VAL 119

There are 11 helices in PDB entry 8A0Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	108	Right-handed alpha
Helix 2	AA2	A	200	204	Right-handed 310
Helix 3	AA3	A	299	303	Right-handed 310
Helix 4	AA4	A	388	392	Right-handed 310
Helix 5	AA5	B	200	204	Right-handed 310
Helix 6	AA6	B	388	392	Right-handed 310
Helix 7	AA7	B	580	584	Right-handed 310
Helix 8	AA8	C	200	204	Right-handed 310
Helix 9	AA9	C	299	303	Right-handed 310
Helix 10	AB1	C	388	392	Right-handed 310
Helix 11	AB2	C	580	584	Right-handed 310

There are 49 sheets in PDB entry 8A0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	64	66	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	121	131	parallel
Strand 3	A	109	116	anti-parallel
Strand 4	A	72	77	anti-parallel
Strand 5	A	80	81	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	90	93	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	149	first strand
Strand 2	A	227	234	parallel
Strand 3	A	206	212	anti-parallel
Strand 4	A	167	172	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	149	first strand
Strand 2	A	227	234	parallel
Strand 3	A	206	212	anti-parallel
Strand 4	A	221	223	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	194	196	anti-parallel
Strand 3	A	185	187	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	245	first strand
Strand 2	A	264	266	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	254	first strand
Strand 2	A	315	326	parallel
Strand 3	A	304	312	anti-parallel
Strand 4	A	272	277	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	292	295	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	333	first strand
Strand 2	A	351	353	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	341	first strand
Strand 2	A	404	415	parallel
Strand 3	A	393	401	anti-parallel
Strand 4	A	359	364	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	349	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	375	378	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	498	505	parallel
Strand 3	A	486	493	anti-parallel
Strand 4	A	451	456	anti-parallel
Strand 5	A	459	461	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	440	first strand
Strand 2	A	475	477	anti-parallel
Strand 3	A	467	469	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	515	first strand
Strand 2	A	528	535	anti-parallel
Strand 3	A	571	576	anti-parallel
Strand 4	A	562	564	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	523	first strand
Strand 2	A	597	607	parallel
Strand 3	A	585	592	anti-parallel
Strand 4	A	543	548	anti-parallel
Strand 5	A	551	552	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	64	66	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	120	132	parallel
Strand 3	B	109	117	anti-parallel
Strand 4	B	72	77	anti-parallel
Strand 5	B	80	81	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	90	93	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	149	first strand
Strand 2	B	227	234	parallel
Strand 3	B	205	212	anti-parallel
Strand 4	B	167	172	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	149	first strand
Strand 2	B	227	234	parallel
Strand 3	B	205	212	anti-parallel
Strand 4	B	221	223	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	194	196	anti-parallel
Strand 3	B	185	187	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	264	266	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	254	first strand
Strand 2	B	315	326	parallel
Strand 3	B	304	312	anti-parallel
Strand 4	B	272	277	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	292	295	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	333	first strand
Strand 2	B	351	353	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	341	first strand
Strand 2	B	404	415	parallel
Strand 3	B	393	401	anti-parallel
Strand 4	B	359	364	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	349	first strand
Strand 2	B	381	384	anti-parallel
Strand 3	B	375	378	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	431	first strand
Strand 2	B	498	506	parallel
Strand 3	B	486	493	anti-parallel
Strand 4	B	451	456	anti-parallel
Strand 5	B	459	460	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	440	first strand
Strand 2	B	475	477	anti-parallel
Strand 3	B	467	469	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	515	first strand
Strand 2	B	528	535	anti-parallel
Strand 3	B	571	576	anti-parallel
Strand 4	B	562	564	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	597	606	parallel
Strand 3	B	585	592	anti-parallel
Strand 4	B	543	548	anti-parallel
Strand 5	B	551	552	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	64	66	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	127	131	parallel
Strand 3	C	109	117	anti-parallel
Strand 4	C	72	77	anti-parallel
Strand 5	C	80	81	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	127	131	parallel
Strand 3	C	109	117	anti-parallel
Strand 4	C	120	123	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	61	first strand
Strand 2	C	96	100	anti-parallel
Strand 3	C	90	93	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	149	first strand
Strand 2	C	227	234	parallel
Strand 3	C	205	213	anti-parallel
Strand 4	C	166	172	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	149	first strand
Strand 2	C	227	234	parallel
Strand 3	C	205	213	anti-parallel
Strand 4	C	221	223	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	194	196	anti-parallel
Strand 3	C	185	187	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	245	first strand
Strand 2	C	264	266	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	254	first strand
Strand 2	C	315	326	parallel
Strand 3	C	304	312	anti-parallel
Strand 4	C	272	277	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	262	first strand
Strand 2	C	292	295	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	333	first strand
Strand 2	C	351	353	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	341	first strand
Strand 2	C	404	415	parallel
Strand 3	C	393	401	anti-parallel
Strand 4	C	359	364	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	349	first strand
Strand 2	C	381	385	anti-parallel
Strand 3	C	375	378	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	431	first strand
Strand 2	C	498	506	parallel
Strand 3	C	486	493	anti-parallel
Strand 4	C	451	456	anti-parallel
Strand 5	C	459	460	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	438	440	first strand
Strand 2	C	475	477	anti-parallel
Strand 3	C	467	469	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	515	first strand
Strand 2	C	528	535	anti-parallel
Strand 3	C	571	576	anti-parallel
Strand 4	C	562	564	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	523	first strand
Strand 2	C	597	607	parallel
Strand 3	C	585	592	anti-parallel
Strand 4	C	543	548	anti-parallel
Strand 5	C	551	552	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A0Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A0Y