Analysis of interatomic Contacts of Structural Units in PDB entry:
8A11

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A11 entry

There are 4 chains in PDB entry 8A11 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 16	ASP 482
B	LEU 14	PHE 483
C	LEU 14	PHE 483
D	SER 16	PHE 483

There are 88 helices in PDB entry 8A11. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	23	Right-handed alpha
Helix 2	AA2	A	25	30	Right-handed alpha
Helix 3	AA3	A	31	46	Right-handed alpha
Helix 4	AA4	A	58	66	Right-handed alpha
Helix 5	AA5	A	67	72	Right-handed 310
Helix 6	AA6	A	86	104	Right-handed alpha
Helix 7	AA7	A	119	132	Right-handed alpha
Helix 8	AA8	A	142	146	Right-handed 310
Helix 9	AA9	A	148	152	Right-handed 310
Helix 10	AB1	A	161	167	Right-handed alpha
Helix 11	AB2	A	182	194	Right-handed alpha
Helix 12	AB3	A	210	221	Right-handed alpha
Helix 13	AB4	A	232	239	Right-handed alpha
Helix 14	AB5	A	243	247	Right-handed 310
Helix 15	AB6	A	287	297	Right-handed alpha
Helix 16	AB7	A	305	319	Right-handed alpha
Helix 17	AB8	A	321	346	Right-handed alpha
Helix 18	AB9	A	351	353	Right-handed 310
Helix 19	AC1	A	369	380	Right-handed alpha
Helix 20	AC2	A	405	412	Right-handed alpha
Helix 21	AC3	A	414	440	Right-handed alpha
Helix 22	AC4	A	444	453	Right-handed alpha
Helix 23	AC5	A	454	473	Right-handed alpha
Helix 24	AC6	B	15	23	Right-handed alpha
Helix 25	AC7	B	25	30	Right-handed alpha
Helix 26	AC8	B	30	47	Right-handed alpha
Helix 27	AC9	B	58	66	Right-handed alpha
Helix 28	AD1	B	67	71	Right-handed 310
Helix 29	AD2	B	86	104	Right-handed alpha
Helix 30	AD3	B	119	132	Right-handed alpha
Helix 31	AD4	B	161	167	Right-handed alpha
Helix 32	AD5	B	182	194	Right-handed alpha
Helix 33	AD6	B	210	222	Right-handed alpha
Helix 34	AD7	B	234	239	Right-handed alpha
Helix 35	AD8	B	243	247	Right-handed 310
Helix 36	AD9	B	287	297	Right-handed alpha
Helix 37	AE1	B	305	319	Right-handed alpha
Helix 38	AE2	B	321	345	Right-handed alpha
Helix 39	AE3	B	349	353	Right-handed 310
Helix 40	AE4	B	363	367	Right-handed 310
Helix 41	AE5	B	371	380	Right-handed alpha
Helix 42	AE6	B	404	409	Right-handed alpha
Helix 43	AE7	B	410	412	Right-handed 310
Helix 44	AE8	B	414	440	Right-handed alpha
Helix 45	AE9	B	444	451	Right-handed alpha
Helix 46	AF1	B	454	473	Right-handed alpha
Helix 47	AF2	C	15	23	Right-handed alpha
Helix 48	AF3	C	25	30	Right-handed alpha
Helix 49	AF4	C	30	46	Right-handed alpha
Helix 50	AF5	C	58	66	Right-handed alpha
Helix 51	AF6	C	67	71	Right-handed 310
Helix 52	AF7	C	86	104	Right-handed alpha
Helix 53	AF8	C	119	132	Right-handed alpha
Helix 54	AF9	C	148	152	Right-handed 310
Helix 55	AG1	C	161	167	Right-handed alpha
Helix 56	AG2	C	183	194	Right-handed alpha
Helix 57	AG3	C	210	221	Right-handed alpha
Helix 58	AG4	C	233	239	Right-handed alpha
Helix 59	AG5	C	288	297	Right-handed alpha
Helix 60	AG6	C	306	319	Right-handed alpha
Helix 61	AG7	C	321	346	Right-handed alpha
Helix 62	AG8	C	369	380	Right-handed alpha
Helix 63	AG9	C	407	412	Right-handed alpha
Helix 64	AH1	C	414	440	Right-handed alpha
Helix 65	AH2	C	444	452	Right-handed alpha
Helix 66	AH3	C	454	473	Right-handed alpha
Helix 67	AH4	D	17	23	Right-handed alpha
Helix 68	AH5	D	25	30	Right-handed alpha
Helix 69	AH6	D	30	46	Right-handed alpha
Helix 70	AH7	D	58	66	Right-handed alpha
Helix 71	AH8	D	67	72	Right-handed 310
Helix 72	AH9	D	86	104	Right-handed alpha
Helix 73	AI1	D	107	109	Right-handed 310
Helix 74	AI2	D	119	132	Right-handed alpha
Helix 75	AI3	D	148	152	Right-handed 310
Helix 76	AI4	D	161	167	Right-handed alpha
Helix 77	AI5	D	183	194	Right-handed alpha
Helix 78	AI6	D	210	222	Right-handed alpha
Helix 79	AI7	D	232	239	Right-handed alpha
Helix 80	AI8	D	243	247	Right-handed 310
Helix 81	AI9	D	287	297	Right-handed alpha
Helix 82	AJ1	D	305	318	Right-handed alpha
Helix 83	AJ2	D	321	345	Right-handed alpha
Helix 84	AJ3	D	369	380	Right-handed alpha
Helix 85	AJ4	D	405	411	Right-handed alpha
Helix 86	AJ5	D	414	440	Right-handed alpha
Helix 87	AJ6	D	444	452	Right-handed alpha
Helix 88	AJ7	D	454	473	Right-handed alpha

There are 14 sheets in PDB entry 8A11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	114	first strand
Strand 2	A	265	270	anti-parallel
Strand 3	A	250	254	anti-parallel
Strand 4	A	224	228	parallel
Strand 5	A	197	200	parallel
Strand 6	A	137	139	parallel
Strand 7	A	168	169	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	276	first strand
Strand 2	A	283	285	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	359	362	anti-parallel
Strand 3	A	400	403	anti-parallel
Strand 4	A	385	387	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	382	383	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	137	139	parallel
Strand 3	B	197	201	parallel
Strand 4	B	224	228	parallel
Strand 5	B	250	254	parallel
Strand 6	B	265	268	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	283	285	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	401	403	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	265	270	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	224	228	parallel
Strand 5	C	197	199	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	168	169	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	276	first strand
Strand 2	C	283	285	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	359	362	anti-parallel
Strand 3	C	400	403	anti-parallel
Strand 4	C	385	387	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	265	270	anti-parallel
Strand 3	D	250	254	anti-parallel
Strand 4	D	224	228	parallel
Strand 5	D	197	201	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	276	first strand
Strand 2	D	283	285	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	362	first strand
Strand 2	D	400	404	anti-parallel
Strand 3	D	385	387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A11

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A11