Analysis of interatomic Contacts of Structural Units in PDB entry:
8A14

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A14 entry

There are 6 chains in PDB entry 8A14 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 43	GLY 240
B	GLN 43	GLY 240
C	GLN 43	GLY 240
D	GLN 43	GLY 240
E	GLN 43	GLY 240
F	GLN 43	GLY 240

There are 30 helices in PDB entry 8A14. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	58	Right-handed alpha
Helix 2	AA2	A	71	74	Right-handed 310
Helix 3	AA3	A	114	119	Right-handed alpha
Helix 4	AA4	A	145	149	Right-handed 310
Helix 5	AA5	A	207	212	Right-handed alpha
Helix 6	AA6	B	51	58	Right-handed alpha
Helix 7	AA7	B	71	74	Right-handed 310
Helix 8	AA8	B	114	119	Right-handed alpha
Helix 9	AA9	B	145	149	Right-handed 310
Helix 10	AB1	B	207	212	Right-handed alpha
Helix 11	AB2	C	51	58	Right-handed alpha
Helix 12	AB3	C	71	74	Right-handed 310
Helix 13	AB4	C	114	119	Right-handed alpha
Helix 14	AB5	C	145	149	Right-handed 310
Helix 15	AB6	C	207	212	Right-handed alpha
Helix 16	AB7	D	51	58	Right-handed alpha
Helix 17	AB8	D	71	74	Right-handed 310
Helix 18	AB9	D	115	120	Right-handed 310
Helix 19	AC1	D	145	149	Right-handed 310
Helix 20	AC2	D	207	212	Right-handed alpha
Helix 21	AC3	E	51	58	Right-handed alpha
Helix 22	AC4	E	71	74	Right-handed 310
Helix 23	AC5	E	114	119	Right-handed alpha
Helix 24	AC6	E	145	149	Right-handed 310
Helix 25	AC7	E	207	212	Right-handed alpha
Helix 26	AC8	F	51	58	Right-handed alpha
Helix 27	AC9	F	71	74	Right-handed 310
Helix 28	AD1	F	114	119	Right-handed alpha
Helix 29	AD2	F	145	149	Right-handed 310
Helix 30	AD3	F	207	212	Right-handed alpha

There are 12 sheets in PDB entry 8A14. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	104	113	parallel
Strand 3	A	227	233	anti-parallel
Strand 4	A	160	165	anti-parallel
Strand 5	A	174	183	anti-parallel
Strand 6	A	141	144	parallel
Strand 7	A	203	206	anti-parallel
Strand 8	A	104	113	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	82	first strand
Strand 2	A	85	89	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	104	113	parallel
Strand 3	B	227	233	anti-parallel
Strand 4	B	160	165	anti-parallel
Strand 5	B	174	183	anti-parallel
Strand 6	B	141	144	parallel
Strand 7	B	203	206	anti-parallel
Strand 8	B	104	113	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	85	89	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	104	113	parallel
Strand 3	C	227	233	anti-parallel
Strand 4	C	160	165	anti-parallel
Strand 5	C	174	183	anti-parallel
Strand 6	C	141	144	parallel
Strand 7	C	203	206	anti-parallel
Strand 8	C	104	113	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	82	first strand
Strand 2	C	85	89	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	D	104	113	parallel
Strand 3	D	227	233	anti-parallel
Strand 4	D	160	165	anti-parallel
Strand 5	D	174	183	anti-parallel
Strand 6	D	141	144	parallel
Strand 7	D	203	206	anti-parallel
Strand 8	D	104	113	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	82	first strand
Strand 2	D	85	89	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	69	first strand
Strand 2	E	104	113	parallel
Strand 3	E	227	233	anti-parallel
Strand 4	E	160	165	anti-parallel
Strand 5	E	174	183	anti-parallel
Strand 6	E	141	144	parallel
Strand 7	E	203	206	anti-parallel
Strand 8	E	104	113	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	82	first strand
Strand 2	E	85	89	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	104	113	parallel
Strand 3	F	227	233	anti-parallel
Strand 4	F	160	165	anti-parallel
Strand 5	F	174	183	anti-parallel
Strand 6	F	141	144	parallel
Strand 7	F	203	206	anti-parallel
Strand 8	F	104	113	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	82	first strand
Strand 2	F	85	89	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A14

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A14