Analysis of interatomic Contacts of Structural Units in PDB entry:
8A17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A17 entry

There are 4 chains in PDB entry 8A17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 481	GLY 724
B	LEU 481	GLY 724
C	LEU 481	GLY 724
D	GLY 483	THR 725

There are 9 helices in PDB entry 8A17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	486	490	Right-handed 310
Helix 2	AA2	A	532	536	Right-handed 310
Helix 3	AA3	A	648	656	Right-handed alpha
Helix 4	AA4	B	486	490	Right-handed 310
Helix 5	AA5	B	648	656	Right-handed alpha
Helix 6	AA6	C	486	490	Right-handed 310
Helix 7	AA7	C	648	656	Right-handed alpha
Helix 8	AA8	D	486	490	Right-handed 310
Helix 9	AA9	D	648	656	Right-handed alpha

There are 21 sheets in PDB entry 8A17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	494	first strand
Strand 2	A	499	502	anti-parallel
Strand 3	A	547	550	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	542	first strand
Strand 2	A	513	525	anti-parallel
Strand 3	A	557	567	anti-parallel
Strand 4	A	570	580	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	599	first strand
Strand 2	A	604	608	anti-parallel
Strand 3	A	674	678	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	666	first strand
Strand 2	A	618	627	anti-parallel
Strand 3	A	698	708	anti-parallel
Strand 4	A	711	722	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	494	first strand
Strand 2	B	498	502	anti-parallel
Strand 3	B	547	551	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	542	first strand
Strand 2	B	513	525	anti-parallel
Strand 3	B	557	567	anti-parallel
Strand 4	B	570	571	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	542	first strand
Strand 2	B	513	525	anti-parallel
Strand 3	B	557	567	anti-parallel
Strand 4	B	575	580	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	599	first strand
Strand 2	B	604	608	anti-parallel
Strand 3	B	674	678	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	666	first strand
Strand 2	B	618	627	anti-parallel
Strand 3	B	698	708	anti-parallel
Strand 4	B	711	722	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	687	688	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	494	first strand
Strand 2	C	499	502	anti-parallel
Strand 3	C	547	550	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	542	first strand
Strand 2	C	515	525	anti-parallel
Strand 3	C	557	567	anti-parallel
Strand 4	C	570	571	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	542	first strand
Strand 2	C	515	525	anti-parallel
Strand 3	C	557	567	anti-parallel
Strand 4	C	575	580	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	599	first strand
Strand 2	C	604	608	anti-parallel
Strand 3	C	674	678	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	666	first strand
Strand 2	C	618	627	anti-parallel
Strand 3	C	698	708	anti-parallel
Strand 4	C	711	722	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	683	684	first strand
Strand 2	C	687	688	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	491	494	first strand
Strand 2	D	498	502	anti-parallel
Strand 3	D	547	551	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	536	542	first strand
Strand 2	D	513	525	anti-parallel
Strand 3	D	557	567	anti-parallel
Strand 4	D	570	580	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	598	599	first strand
Strand 2	D	604	608	anti-parallel
Strand 3	D	674	678	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	659	666	first strand
Strand 2	D	618	627	anti-parallel
Strand 3	D	698	708	anti-parallel
Strand 4	D	711	722	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	683	684	first strand
Strand 2	D	687	688	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A17

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A17