Analysis of interatomic Contacts of Structural Units in PDB entry:
8A25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A25 entry

There is 1 chain in PDB entry 8A25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 20GLU 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8A25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 41Right-handed alpha
Helix 2
AA2
A
61 71Right-handed alpha
Helix 3
AA3
A
74 77Right-handed 310
Helix 4
AA4
A
91 95Right-handed 310
Helix 5
AA5
A
101 113Right-handed alpha
Helix 6
AA6
A
128 134Right-handed alpha
Helix 7
AA7
A
138 160Right-handed alpha
Helix 8
AA8
A
172 175Right-handed 310
Helix 9
AA9
A
176 183Right-handed alpha
Helix 10
AB1
A
184 210Right-handed alpha
Helix 11
AB2
A
219 230Right-handed alpha
Helix 12
AB3
A
231 235Right-handed 310
Helix 13
AB4
A
251 254Right-handed 310
Helix 14
AB5
A
255 262Right-handed alpha
Helix 15
AB6
A
264 268Right-handed 310
Helix 16
AB7
A
284 302Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8A25.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
23 28parallel
Strand 3
A
121 126parallel
Strand 4
A
164 168parallel
Strand 5
A
214 218parallel
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