Analysis of interatomic Contacts of Structural Units in PDB entry:
8A28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A28 entry

There are 2 chains in PDB entry 8A28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22CYS 403
B
 GLU 22GLY 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8A28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 30Right-handed 310
Helix 2
AA2
A
34 38Right-handed 310
Helix 3
AA3
A
47 54Right-handed alpha
Helix 4
AA4
A
58 60Right-handed 310
Helix 5
AA5
A
68 73Right-handed alpha
Helix 6
AA6
A
74 89Right-handed alpha
Helix 7
AA7
A
133 146Right-handed alpha
Helix 8
AA8
A
149 153Right-handed 310
Helix 9
AA9
A
155 158Right-handed 310
Helix 10
AB1
A
164 167Right-handed 310
Helix 11
AB2
A
168 176Right-handed 310
Helix 12
AB3
A
223 227Right-handed 310
Helix 13
AB4
A
231 242Right-handed alpha
Helix 14
AB5
B
23 30Right-handed 310
Helix 15
AB6
B
47 54Right-handed alpha
Helix 16
AB7
B
58 60Right-handed 310
Helix 17
AB8
B
68 73Right-handed alpha
Helix 18
AB9
B
74 89Right-handed alpha
Helix 19
AC1
B
133 145Right-handed alpha
Helix 20
AC2
B
149 153Right-handed 310
Helix 21
AC3
B
155 158Right-handed 310
Helix 22
AC4
B
164 167Right-handed 310
Helix 23
AC5
B
168 176Right-handed 310
Helix 24
AC6
B
231 242Right-handed alpha
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There are 7 sheets in PDB entry 8A28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
62 67parallel
Strand 3
A
103 107parallel
Strand 4
A
122 127parallel
Strand 5
A
112 114anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
212 214anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
389 399anti-parallel
Strand 3
A
289 298anti-parallel
Strand 4
A
280 286anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
389 399anti-parallel
Strand 3
A
323 331anti-parallel
Strand 4
A
359 366anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
305 310anti-parallel
Strand 3
A
375 382anti-parallel
Strand 4
A
335 343anti-parallel
Strand 5
A
347 353anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 95first strand
Strand 2
B
62 67parallel
Strand 3
B
103 107parallel
Strand 4
B
122 127parallel
Strand 5
B
112 114anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
212 214anti-parallel
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