Analysis of interatomic Contacts of Structural Units in PDB entry:
8A29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A29 entry

There are 2 chains in PDB entry 8A29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 33	ASP 620
B	THR 32	LEU 129

There are171 helices in PDB entry 8A29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	48	Right-handed alpha
Helix 2	AA2	A	51	56	Right-handed alpha
Helix 3	AA3	A	57	58	Right-handed 310
Helix 4	AA4	A	59	61	Right-handed 310
Helix 5	AA5	A	62	82	Right-handed alpha
Helix 6	AA6	A	85	90	Right-handed alpha
Helix 7	AA7	A	91	102	Right-handed alpha
Helix 8	AA8	A	117	123	Right-handed alpha
Helix 9	AA9	A	126	133	Right-handed 310
Helix 10	AB1	A	144	148	Right-handed 310
Helix 11	AB2	A	160	176	Right-handed alpha
Helix 12	AB3	A	188	191	Right-handed 310
Helix 13	AB4	A	192	205	Right-handed alpha
Helix 14	AB5	A	243	248	Right-handed alpha
Helix 15	AB6	A	260	273	Right-handed alpha
Helix 16	AB7	A	290	296	Right-handed alpha
Helix 17	AB8	A	296	301	Right-handed alpha
Helix 18	AB9	A	320	336	Right-handed alpha
Helix 19	AC1	A	346	351	Right-handed alpha
Helix 20	AC2	A	352	359	Right-handed alpha
Helix 21	AC3	A	369	383	Right-handed alpha
Helix 22	AC4	A	393	397	Right-handed alpha
Helix 23	AC5	A	399	406	Right-handed alpha
Helix 24	AC6	A	428	432	Right-handed 310
Helix 25	AC7	A	435	442	Right-handed alpha
Helix 26	AC8	A	453	467	Right-handed alpha
Helix 27	AC9	A	514	526	Right-handed alpha
Helix 28	AD1	A	539	550	Right-handed alpha
Helix 29	AD2	A	564	576	Right-handed alpha
Helix 30	AD3	A	596	604	Right-handed alpha
Helix 31	AD4	A	607	620	Right-handed alpha
Helix 32	AD5	B	45	49	Right-handed 310
Helix 33	AD6	B	51	56	Right-handed alpha
Helix 34	AD7	B	59	82	Right-handed alpha
Helix 35	AD8	B	85	90	Right-handed alpha
Helix 36	AD9	B	91	102	Right-handed alpha
Helix 37	AE1	B	117	123	Right-handed alpha
Helix 38	AE2	B	126	133	Right-handed 310
Helix 39	AE3	B	160	175	Right-handed alpha
Helix 40	AE4	B	188	191	Right-handed 310
Helix 41	AE5	B	192	206	Right-handed alpha
Helix 42	AE6	B	242	248	Right-handed alpha
Helix 43	AE7	B	260	273	Right-handed alpha
Helix 44	AE8	B	290	296	Right-handed alpha
Helix 45	AE9	B	320	336	Right-handed alpha
Helix 46	AF1	B	346	351	Right-handed alpha
Helix 47	AF2	B	352	359	Right-handed alpha
Helix 48	AF3	B	369	383	Right-handed alpha
Helix 49	AF4	B	393	397	Right-handed alpha
Helix 50	AF5	B	399	406	Right-handed alpha
Helix 51	AF6	B	428	432	Right-handed 310
Helix 52	AF7	B	435	442	Right-handed alpha
Helix 53	AF8	B	453	467	Right-handed alpha
Helix 54	AF9	B	514	526	Right-handed alpha
Helix 55	AG1	B	539	550	Right-handed alpha
Helix 56	AG2	B	564	577	Right-handed alpha
Helix 57	AG3	B	596	604	Right-handed alpha
Helix 58	AG4	B	607	621	Right-handed alpha
Helix 59	AG5	C	43	48	Right-handed alpha
Helix 60	AG6	C	51	58	Right-handed alpha
Helix 61	AG7	C	59	61	Right-handed 310
Helix 62	AG8	C	62	82	Right-handed alpha
Helix 63	AG9	C	85	90	Right-handed alpha
Helix 64	AH1	C	91	102	Right-handed alpha
Helix 65	AH2	C	117	123	Right-handed alpha
Helix 66	AH3	C	126	133	Right-handed 310
Helix 67	AH4	C	160	175	Right-handed alpha
Helix 68	AH5	C	188	191	Right-handed 310
Helix 69	AH6	C	192	205	Right-handed alpha
Helix 70	AH7	C	242	248	Right-handed alpha
Helix 71	AH8	C	260	273	Right-handed alpha
Helix 72	AH9	C	290	296	Right-handed alpha
Helix 73	AI1	C	296	301	Right-handed alpha
Helix 74	AI2	C	320	336	Right-handed alpha
Helix 75	AI3	C	346	351	Right-handed alpha
Helix 76	AI4	C	352	359	Right-handed alpha
Helix 77	AI5	C	369	383	Right-handed alpha
Helix 78	AI6	C	393	397	Right-handed alpha
Helix 79	AI7	C	399	406	Right-handed alpha
Helix 80	AI8	C	435	442	Right-handed alpha
Helix 81	AI9	C	453	467	Right-handed alpha
Helix 82	AJ1	C	514	525	Right-handed alpha
Helix 83	AJ2	C	539	548	Right-handed alpha
Helix 84	AJ3	C	564	576	Right-handed alpha
Helix 85	AJ4	C	596	605	Right-handed alpha
Helix 86	AJ5	C	607	622	Right-handed alpha
Helix 87	AJ6	D	45	49	Right-handed 310
Helix 88	AJ7	D	51	57	Right-handed alpha
Helix 89	AJ8	D	59	82	Right-handed alpha
Helix 90	AJ9	D	85	91	Right-handed alpha
Helix 91	AK1	D	91	102	Right-handed alpha
Helix 92	AK2	D	117	123	Right-handed alpha
Helix 93	AK3	D	126	133	Right-handed 310
Helix 94	AK4	D	160	175	Right-handed alpha
Helix 95	AK5	D	188	191	Right-handed 310
Helix 96	AK6	D	192	205	Right-handed alpha
Helix 97	AK7	D	243	248	Right-handed alpha
Helix 98	AK8	D	260	273	Right-handed alpha
Helix 99	AK9	D	290	296	Right-handed alpha
Helix 100	AL1	D	298	300	Right-handed 310
Helix 101	AL2	D	320	336	Right-handed alpha
Helix 102	AL3	D	346	351	Right-handed alpha
Helix 103	AL4	D	352	359	Right-handed alpha
Helix 104	AL5	D	369	383	Right-handed alpha
Helix 105	AL6	D	393	397	Right-handed alpha
Helix 106	AL7	D	399	406	Right-handed alpha
Helix 107	AL8	D	435	442	Right-handed alpha
Helix 108	AL9	D	453	467	Right-handed alpha
Helix 109	AM1	D	514	526	Right-handed alpha
Helix 110	AM2	D	539	550	Right-handed alpha
Helix 111	AM3	D	564	576	Right-handed alpha
Helix 112	AM4	D	596	604	Right-handed alpha
Helix 113	AM5	D	607	622	Right-handed alpha
Helix 114	AM6	E	45	49	Right-handed 310
Helix 115	AM7	E	51	56	Right-handed alpha
Helix 116	AM8	E	57	58	Right-handed 310
Helix 117	AM9	E	59	61	Right-handed 310
Helix 118	AN1	E	62	82	Right-handed alpha
Helix 119	AN2	E	85	91	Right-handed alpha
Helix 120	AN3	E	91	102	Right-handed alpha
Helix 121	AN4	E	117	123	Right-handed alpha
Helix 122	AN5	E	126	133	Right-handed 310
Helix 123	AN6	E	160	176	Right-handed alpha
Helix 124	AN7	E	188	191	Right-handed 310
Helix 125	AN8	E	192	205	Right-handed alpha
Helix 126	AN9	E	242	248	Right-handed alpha
Helix 127	AO1	E	260	273	Right-handed alpha
Helix 128	AO2	E	290	296	Right-handed alpha
Helix 129	AO3	E	320	336	Right-handed alpha
Helix 130	AO4	E	346	351	Right-handed alpha
Helix 131	AO5	E	352	359	Right-handed alpha
Helix 132	AO6	E	369	383	Right-handed alpha
Helix 133	AO7	E	393	397	Right-handed alpha
Helix 134	AO8	E	399	406	Right-handed alpha
Helix 135	AO9	E	428	432	Right-handed 310
Helix 136	AP1	E	435	442	Right-handed alpha
Helix 137	AP2	E	453	467	Right-handed alpha
Helix 138	AP3	E	514	526	Right-handed alpha
Helix 139	AP4	E	539	549	Right-handed alpha
Helix 140	AP5	E	564	576	Right-handed alpha
Helix 141	AP6	E	596	604	Right-handed alpha
Helix 142	AP7	E	607	620	Right-handed alpha
Helix 143	AP8	F	45	49	Right-handed 310
Helix 144	AP9	F	51	58	Right-handed alpha
Helix 145	AQ1	F	59	61	Right-handed 310
Helix 146	AQ2	F	62	82	Right-handed alpha
Helix 147	AQ3	F	85	91	Right-handed alpha
Helix 148	AQ4	F	91	102	Right-handed alpha
Helix 149	AQ5	F	117	124	Right-handed alpha
Helix 150	AQ6	F	126	133	Right-handed 310
Helix 151	AQ7	F	144	148	Right-handed 310
Helix 152	AQ8	F	160	176	Right-handed alpha
Helix 153	AQ9	F	188	191	Right-handed 310
Helix 154	AR1	F	192	205	Right-handed alpha
Helix 155	AR2	F	244	248	Right-handed alpha
Helix 156	AR3	F	260	273	Right-handed alpha
Helix 157	AR4	F	290	296	Right-handed alpha
Helix 158	AR5	F	320	336	Right-handed alpha
Helix 159	AR6	F	346	351	Right-handed alpha
Helix 160	AR7	F	352	359	Right-handed alpha
Helix 161	AR8	F	369	383	Right-handed alpha
Helix 162	AR9	F	393	397	Right-handed alpha
Helix 163	AS1	F	399	407	Right-handed alpha
Helix 164	AS2	F	428	432	Right-handed 310
Helix 165	AS3	F	435	442	Right-handed alpha
Helix 166	AS4	F	453	467	Right-handed alpha
Helix 167	AS5	F	514	526	Right-handed alpha
Helix 168	AS6	F	539	548	Right-handed alpha
Helix 169	AS7	F	564	577	Right-handed alpha
Helix 170	AS8	F	596	604	Right-handed alpha
Helix 171	AS9	F	607	622	Right-handed alpha

There are 24 sheets in PDB entry 8A29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	302	303	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	181	186	parallel
Strand 3	A	209	215	parallel
Strand 4	A	277	283	parallel
Strand 5	A	251	257	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	339	343	parallel
Strand 3	A	386	392	parallel
Strand 4	A	415	419	parallel
Strand 5	A	471	474	parallel
Strand 6	A	447	449	parallel
Strand 7	A	534	536	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	501	first strand
Strand 2	A	528	531	anti-parallel
Strand 3	A	506	511	parallel
Strand 4	A	552	560	parallel
Strand 5	A	582	587	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	302	303	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	181	186	parallel
Strand 3	B	209	215	parallel
Strand 4	B	277	283	parallel
Strand 5	B	251	257	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	365	first strand
Strand 2	B	339	343	parallel
Strand 3	B	386	392	parallel
Strand 4	B	415	419	parallel
Strand 5	B	471	474	parallel
Strand 6	B	447	449	parallel
Strand 7	B	534	536	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	501	first strand
Strand 2	B	528	531	anti-parallel
Strand 3	B	506	511	parallel
Strand 4	B	552	560	parallel
Strand 5	B	582	587	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	302	303	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	111	first strand
Strand 2	C	181	186	parallel
Strand 3	C	209	215	parallel
Strand 4	C	277	283	parallel
Strand 5	C	251	257	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	339	343	parallel
Strand 3	C	386	392	parallel
Strand 4	C	415	419	parallel
Strand 5	C	471	474	parallel
Strand 6	C	447	449	parallel
Strand 7	C	534	536	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	501	first strand
Strand 2	C	528	531	anti-parallel
Strand 3	C	506	511	parallel
Strand 4	C	552	560	parallel
Strand 5	C	582	587	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	84	first strand
Strand 2	D	302	303	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	111	first strand
Strand 2	D	181	186	parallel
Strand 3	D	209	215	parallel
Strand 4	D	277	283	parallel
Strand 5	D	251	257	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	365	first strand
Strand 2	D	339	343	parallel
Strand 3	D	386	392	parallel
Strand 4	D	415	419	parallel
Strand 5	D	471	474	parallel
Strand 6	D	447	449	parallel
Strand 7	D	534	536	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	501	first strand
Strand 2	D	528	531	anti-parallel
Strand 3	D	506	511	parallel
Strand 4	D	552	560	parallel
Strand 5	D	582	587	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	E	302	303	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	111	first strand
Strand 2	E	181	186	parallel
Strand 3	E	209	215	parallel
Strand 4	E	277	283	parallel
Strand 5	E	251	257	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	365	first strand
Strand 2	E	339	343	parallel
Strand 3	E	386	392	parallel
Strand 4	E	415	419	parallel
Strand 5	E	471	474	parallel
Strand 6	E	447	449	parallel
Strand 7	E	534	536	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	498	501	first strand
Strand 2	E	528	531	anti-parallel
Strand 3	E	505	511	parallel
Strand 4	E	550	560	parallel
Strand 5	E	582	587	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	302	303	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	111	first strand
Strand 2	F	181	186	parallel
Strand 3	F	210	215	parallel
Strand 4	F	278	283	parallel
Strand 5	F	251	257	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	365	first strand
Strand 2	F	339	343	parallel
Strand 3	F	386	392	parallel
Strand 4	F	415	419	parallel
Strand 5	F	471	474	parallel
Strand 6	F	447	449	parallel
Strand 7	F	534	536	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	498	501	first strand
Strand 2	F	528	531	anti-parallel
Strand 3	F	506	511	parallel
Strand 4	F	552	560	parallel
Strand 5	F	582	587	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A29

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A29