Analysis of interatomic Contacts of Structural Units in PDB entry:
8A3U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A3U entry

There is 1 chain in PDB entry 8A3U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 8A3U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 14Right-handed alpha
Helix 2
AA2
A
34 42Right-handed alpha
Helix 3
AA3
A
44 49Right-handed alpha
Helix 4
AA4
A
52 58Right-handed 310
Helix 5
AA5
A
63 76Right-handed alpha
Helix 6
AA6
A
119 176Right-handed alpha
Helix 7
AA7
A
181 211Right-handed alpha
Helix 8
AA8
A
222 234Right-handed alpha
Helix 9
AA9
A
236 241Right-handed alpha
Helix 10
AB1
A
249 252Right-handed 310
Helix 11
AB2
A
259 277Right-handed alpha
Helix 12
AB3
A
312 316Right-handed 310
Helix 13
AB4
A
330 342Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8A3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 33first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
109 118anti-parallel
Strand 4
A
92 104anti-parallel
Strand 5
A
79 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
254 257anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 247first strand
Strand 2
A
284 292parallel
Strand 3
A
296 302anti-parallel
Strand 4
A
356 361anti-parallel
Strand 5
A
346 350anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il