Analysis of interatomic Contacts of Structural Units in PDB entry:
8A42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A42 entry

There are 2 chains in PDB entry 8A42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33LYS 659
G
 UNK 1UNK 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8A42. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 63Right-handed alpha
Helix 2
AA2
A
118 131Right-handed alpha
Helix 3
AA3
A
136 141Right-handed alpha
Helix 4
AA4
A
145 151Right-handed alpha
Helix 5
AA5
A
156 160Right-handed 310
Helix 6
AA6
A
180 185Right-handed alpha
Helix 7
AA7
A
186 191Right-handed 310
Helix 8
AA8
A
194 202Right-handed alpha
Helix 9
AA9
A
203 205Right-handed 310
Helix 10
AB1
A
210 214Right-handed 310
Helix 11
AB2
A
241 245Right-handed 310
Helix 12
AB3
A
261 269Right-handed alpha
Helix 13
AB4
A
283 291Right-handed alpha
Helix 14
AB5
A
323 335Right-handed alpha
Helix 15
AB6
A
336 347Right-handed alpha
Helix 16
AB7
A
348 358Right-handed alpha
Helix 17
AB8
A
362 366Right-handed 310
Helix 18
AB9
A
383 391Right-handed alpha
Helix 19
AC1
A
392 399Right-handed 310
Helix 20
AC2
A
412 430Right-handed alpha
Helix 21
AC3
A
446 465Right-handed alpha
Helix 22
AC4
A
477 485Right-handed alpha
Helix 23
AC5
A
490 494Right-handed 310
Helix 24
AC6
A
511 516Right-handed alpha
Helix 25
AC7
A
517 519Right-handed 310
Helix 26
AC8
A
522 531Right-handed alpha
Helix 27
AC9
A
537 543Right-handed alpha
Helix 28
AD1
A
544 557Right-handed alpha
Helix 29
AD2
A
561 580Right-handed alpha
Helix 30
AD3
A
628 654Right-handed alpha
Helix 31
AD4
A
655 658Right-handed 310
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There are 9 sheets in PDB entry 8A42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 41first strand
Strand 2
A
249 254parallel
Strand 3
A
230 235anti-parallel
Strand 4
A
220 226anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
78 80anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 88first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
169 173anti-parallel
Strand 4
A
162 166anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
112 115anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 276first strand
Strand 2
A
593 596anti-parallel
Strand 3
A
296 297anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
304 309anti-parallel
Strand 3
A
582 587anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
381 382anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 443first strand
Strand 2
A
469 476parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 504first strand
Strand 2
G
2 4anti-parallel
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