Analysis of interatomic Contacts of Structural Units in PDB entry:
8A43

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A43 entry

There are 12 chains in PDB entry 8A43 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	LEU 1715
B	GLY 4	VAL 1134
C	ALA 39	GLN 344
E	ASP 2	GLN 210
F	LYS 50	ASP 127
H	ALA 2	ALA 149
I	ASP 16	HIS 62
J	MET 1	GLU 66
K	LYS 24	GLU 130
L	GLN 13	ARG 58
N	ALA 9	PHE 113
M	PRO 22	PRO 143

There are126 helices in PDB entry 8A43. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	28	Right-handed alpha
Helix 2	AA2	A	52	56	Right-handed 310
Helix 3	AA3	A	92	102	Right-handed alpha
Helix 4	AA4	A	113	128	Right-handed alpha
Helix 5	AA5	A	132	138	Right-handed alpha
Helix 6	AA6	A	159	171	Right-handed alpha
Helix 7	AA7	A	181	201	Right-handed alpha
Helix 8	AA8	A	229	236	Right-handed alpha
Helix 9	AA9	A	257	280	Right-handed alpha
Helix 10	AB1	A	293	296	Right-handed 310
Helix 11	AB2	A	323	346	Right-handed alpha
Helix 12	AB3	A	383	403	Right-handed alpha
Helix 13	AB4	A	426	431	Right-handed alpha
Helix 14	AB5	A	459	466	Right-handed alpha
Helix 15	AB6	A	476	487	Right-handed alpha
Helix 16	AB7	A	511	523	Right-handed alpha
Helix 17	AB8	A	557	561	Right-handed 310
Helix 18	AB9	A	579	585	Right-handed 310
Helix 19	AC1	A	601	610	Right-handed alpha
Helix 20	AC2	A	631	634	Right-handed 310
Helix 21	AC3	A	635	642	Right-handed alpha
Helix 22	AC4	A	649	660	Right-handed alpha
Helix 23	AC5	A	683	696	Right-handed alpha
Helix 24	AC6	A	750	755	Right-handed alpha
Helix 25	AC7	A	760	770	Right-handed alpha
Helix 26	AC8	A	771	788	Right-handed alpha
Helix 27	AC9	A	807	817	Right-handed alpha
Helix 28	AD1	A	819	821	Right-handed 310
Helix 29	AD2	A	822	832	Right-handed alpha
Helix 30	AD3	A	841	852	Right-handed alpha
Helix 31	AD4	A	855	870	Right-handed alpha
Helix 32	AD5	A	872	877	Right-handed alpha
Helix 33	AD6	A	894	899	Right-handed alpha
Helix 34	AD7	A	909	914	Right-handed alpha
Helix 35	AD8	A	944	948	Right-handed 310
Helix 36	AD9	A	962	993	Right-handed alpha
Helix 37	AE1	A	1028	1033	Right-handed alpha
Helix 38	AE2	A	1036	1041	Right-handed alpha
Helix 39	AE3	A	1043	1050	Right-handed alpha
Helix 40	AE4	A	1063	1079	Right-handed alpha
Helix 41	AE5	A	1089	1103	Right-handed alpha
Helix 42	AE6	A	1114	1127	Right-handed alpha
Helix 43	AE7	A	1128	1138	Right-handed alpha
Helix 44	AE8	A	1145	1150	Right-handed alpha
Helix 45	AE9	A	1160	1180	Right-handed alpha
Helix 46	AF1	A	1190	1204	Right-handed alpha
Helix 47	AF2	A	1210	1226	Right-handed alpha
Helix 48	AF3	A	1243	1253	Right-handed alpha
Helix 49	AF4	A	1274	1285	Right-handed alpha
Helix 50	AF5	A	1323	1332	Right-handed alpha
Helix 51	AF6	A	1336	1362	Right-handed alpha
Helix 52	AF7	A	1496	1509	Right-handed alpha
Helix 53	AF8	A	1539	1549	Right-handed alpha
Helix 54	AF9	A	1584	1589	Right-handed alpha
Helix 55	AG1	A	1606	1613	Right-handed alpha
Helix 56	AG2	A	1614	1631	Right-handed alpha
Helix 57	AG3	A	1640	1649	Right-handed alpha
Helix 58	AG4	A	1661	1665	Right-handed 310
Helix 59	AG5	A	1667	1673	Right-handed alpha
Helix 60	AG6	A	1676	1688	Right-handed alpha
Helix 61	AG7	A	1695	1703	Right-handed alpha
Helix 62	AG8	B	4	8	Right-handed 310
Helix 63	AG9	B	33	38	Right-handed alpha
Helix 64	AH1	B	39	57	Right-handed alpha
Helix 65	AH2	B	99	106	Right-handed alpha
Helix 66	AH3	B	152	159	Right-handed alpha
Helix 67	AH4	B	196	200	Right-handed 310
Helix 68	AH5	B	249	256	Right-handed alpha
Helix 69	AH6	B	261	268	Right-handed alpha
Helix 70	AH7	B	277	289	Right-handed alpha
Helix 71	AH8	B	296	313	Right-handed alpha
Helix 72	AH9	B	319	329	Right-handed alpha
Helix 73	AI1	B	333	337	Right-handed 310
Helix 74	AI2	B	339	358	Right-handed alpha
Helix 75	AI3	B	376	406	Right-handed alpha
Helix 76	AI4	B	415	420	Right-handed alpha
Helix 77	AI5	B	426	436	Right-handed alpha
Helix 78	AI6	B	462	469	Right-handed alpha
Helix 79	AI7	B	475	479	Right-handed 310
Helix 80	AI8	B	483	487	Right-handed 310
Helix 81	AI9	B	529	536	Right-handed alpha
Helix 82	AJ1	B	570	584	Right-handed alpha
Helix 83	AJ2	B	637	640	Right-handed 310
Helix 84	AJ3	B	647	651	Right-handed 310
Helix 85	AJ4	B	662	667	Right-handed 310
Helix 86	AJ5	B	669	673	Right-handed 310
Helix 87	AJ6	B	681	692	Right-handed alpha
Helix 88	AJ7	B	693	695	Right-handed 310
Helix 89	AJ8	B	724	728	Right-handed 310
Helix 90	AJ9	B	731	735	Right-handed 310
Helix 91	AK1	B	761	766	Right-handed alpha
Helix 92	AK2	B	916	920	Right-handed 310
Helix 93	AK3	B	926	942	Right-handed alpha
Helix 94	AK4	B	957	970	Right-handed alpha
Helix 95	AK5	B	1038	1049	Right-handed alpha
Helix 96	AK6	B	1051	1058	Right-handed alpha
Helix 97	AK7	B	1113	1126	Right-handed alpha
Helix 98	AK8	C	41	47	Right-handed alpha
Helix 99	AK9	C	69	84	Right-handed alpha
Helix 100	AL1	C	102	112	Right-handed alpha
Helix 101	AL2	C	118	122	Right-handed 310
Helix 102	AL3	C	158	163	Right-handed alpha
Helix 103	AL4	C	180	185	Right-handed alpha
Helix 104	AL5	C	249	257	Right-handed alpha
Helix 105	AL6	C	317	344	Right-handed alpha
Helix 106	AL7	E	3	25	Right-handed alpha
Helix 107	AL8	E	29	34	Right-handed alpha
Helix 108	AL9	E	36	44	Right-handed alpha
Helix 109	AM1	E	83	98	Right-handed alpha
Helix 110	AM2	E	111	122	Right-handed alpha
Helix 111	AM3	E	152	164	Right-handed alpha
Helix 112	AM4	E	177	184	Right-handed alpha
Helix 113	AM5	F	58	75	Right-handed alpha
Helix 114	AM6	F	92	100	Right-handed alpha
Helix 115	AM7	F	119	123	Right-handed 310
Helix 116	AM8	H	83	88	Right-handed 310
Helix 117	AM9	J	16	27	Right-handed alpha
Helix 118	AN1	J	30	38	Right-handed alpha
Helix 119	AN2	J	42	47	Right-handed alpha
Helix 120	AN3	J	59	63	Right-handed 310
Helix 121	AN4	K	50	62	Right-handed alpha
Helix 122	AN5	K	92	129	Right-handed alpha
Helix 123	AN6	N	35	39	Right-handed 310
Helix 124	AN7	N	80	84	Right-handed alpha
Helix 125	AN8	M	31	36	Right-handed alpha
Helix 126	AN9	M	52	57	Right-handed 310

There are 36 sheets in PDB entry 8A43. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	298	299	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	218	first strand
Strand 2	A	222	225	anti-parallel
Strand 3	A	254	255	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	575	577	first strand
Strand 2	A	440	447	parallel
Strand 3	A	593	597	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	575	577	first strand
Strand 2	A	440	447	parallel
Strand 3	B	1011	1013	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	458	first strand
Strand 2	A	563	568	parallel
Strand 3	A	547	549	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	537	541	anti-parallel
Strand 3	A	496	498	anti-parallel
Strand 4	A	504	506	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	917	918	first strand
Strand 2	A	950	951	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1265	1267	first strand
Strand 2	A	1577	1579	anti-parallel
Strand 3	A	1563	1564	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1288	1289	first strand
Strand 2	A	1552	1554	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1294	1300	first strand
Strand 2	A	1314	1321	anti-parallel
Strand 3	A	1524	1530	anti-parallel
Strand 4	A	1514	1516	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	83	first strand
Strand 2	B	113	119	anti-parallel
Strand 3	B	129	133	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	175	179	anti-parallel
Strand 3	B	454	456	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	372	375	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	210	211	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	215	first strand
Strand 2	B	221	223	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	239	first strand
Strand 2	B	244	248	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	557	first strand
Strand 2	B	562	566	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	598	first strand
Strand 2	B	609	613	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	635	first strand
Strand 2	B	620	625	anti-parallel
Strand 3	B	658	659	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	714	first strand
Strand 2	B	771	775	anti-parallel
Strand 3	B	871	875	anti-parallel
Strand 4	B	847	849	anti-parallel
Strand 5	B	818	819	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	893	897	first strand
Strand 2	B	757	760	parallel
Strand 3	B	913	914	anti-parallel
Strand 4	B	742	744	parallel
Strand 5	B	992	996	anti-parallel
Strand 6	B	976	977	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	826	first strand
Strand 2	B	839	840	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	884	first strand
Strand 2	B	1000	1001	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1066	1070	first strand
Strand 2	B	1107	1111	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	62	64	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	214	217	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	140	143	anti-parallel
Strand 3	C	209	211	anti-parallel
Strand 4	C	91	94	anti-parallel
Strand 5	L	54	56	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	231	first strand
Strand 2	C	310	312	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	266	first strand
Strand 2	C	271	275	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	101	103	parallel
Strand 4	E	126	128	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	82	first strand
Strand 2	E	109	110	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	150	first strand
Strand 2	E	190	193	anti-parallel
Strand 3	E	205	209	anti-parallel
Strand 4	E	172	173	parallel

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There are 9 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	142	148	anti-parallel
Strand 3	H	55	61	anti-parallel
Strand 4	H	4	14	anti-parallel
Strand 5	H	26	32	anti-parallel
Strand 6	H	38	43	anti-parallel
Strand 7	H	121	127	anti-parallel
Strand 8	H	112	118	anti-parallel
Strand 9	H	96	98	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	27	30	first strand
Strand 2	K	41	44	anti-parallel
Strand 3	K	81	86	anti-parallel
Strand 4	K	65	71	anti-parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	98	105	parallel
Strand 3	N	23	28	parallel
Strand 4	N	85	93	first strand
Strand 5	M	40	48	anti-parallel
Strand 6	M	113	118	parallel
Strand 7	M	76	85	anti-parallel
Strand 8	M	68	73	anti-parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	42	45	first strand
Strand 2	N	58	63	anti-parallel
Strand 3	N	68	72	anti-parallel
Strand 4	N	108	109	anti-parallel
Strand 5	N	23	28	parallel
Strand 6	N	98	105	parallel
Strand 7	M	93	96	first strand
Strand 8	M	106	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A43

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A43