Analysis of interatomic Contacts of Structural Units in PDB entry:
8A49

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A49 entry

There are 4 chains in PDB entry 8A49 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 238	SER 444
C	GLU 102	ARG 990
D	LYS 103	ARG 990
B	PRO 238	SER 444

There are 72 helices in PDB entry 8A49. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	246	251	Right-handed alpha
Helix 2	AA2	A	309	316	Right-handed alpha
Helix 3	AA3	A	356	360	Right-handed 310
Helix 4	AA4	A	414	420	Right-handed alpha
Helix 5	AA5	A	432	436	Right-handed 310
Helix 6	AA6	C	121	123	Right-handed 310
Helix 7	AA7	C	136	140	Right-handed 310
Helix 8	AA8	C	159	167	Right-handed alpha
Helix 9	AA9	C	167	176	Right-handed alpha
Helix 10	AB1	C	186	188	Right-handed 310
Helix 11	AB2	C	206	222	Right-handed alpha
Helix 12	AB3	C	247	263	Right-handed alpha
Helix 13	AB4	C	288	293	Right-handed alpha
Helix 14	AB5	C	305	311	Right-handed alpha
Helix 15	AB6	C	324	333	Right-handed alpha
Helix 16	AB7	C	337	339	Right-handed 310
Helix 17	AB8	C	380	388	Right-handed alpha
Helix 18	AB9	C	404	407	Right-handed 310
Helix 19	AC1	C	414	418	Right-handed 310
Helix 20	AC2	C	424	428	Right-handed 310
Helix 21	AC3	C	434	447	Right-handed alpha
Helix 22	AC4	C	460	471	Right-handed alpha
Helix 23	AC5	C	474	481	Right-handed alpha
Helix 24	AC6	C	497	501	Right-handed 310
Helix 25	AC7	C	524	528	Right-handed 310
Helix 26	AC8	C	605	623	Right-handed alpha
Helix 27	AC9	C	660	665	Right-handed alpha
Helix 28	AD1	C	678	687	Right-handed alpha
Helix 29	AD2	C	701	706	Right-handed alpha
Helix 30	AD3	C	780	785	Right-handed alpha
Helix 31	AD4	C	786	788	Right-handed 310
Helix 32	AD5	C	826	831	Right-handed alpha
Helix 33	AD6	C	854	860	Right-handed alpha
Helix 34	AD7	C	926	943	Right-handed alpha
Helix 35	AD8	C	948	967	Right-handed alpha
Helix 36	AD9	C	972	985	Right-handed alpha
Helix 37	AE1	D	121	123	Right-handed 310
Helix 38	AE2	D	136	140	Right-handed 310
Helix 39	AE3	D	159	167	Right-handed alpha
Helix 40	AE4	D	167	176	Right-handed alpha
Helix 41	AE5	D	186	188	Right-handed 310
Helix 42	AE6	D	206	222	Right-handed alpha
Helix 43	AE7	D	247	263	Right-handed alpha
Helix 44	AE8	D	288	293	Right-handed alpha
Helix 45	AE9	D	305	311	Right-handed alpha
Helix 46	AF1	D	324	333	Right-handed alpha
Helix 47	AF2	D	337	339	Right-handed 310
Helix 48	AF3	D	380	388	Right-handed alpha
Helix 49	AF4	D	404	407	Right-handed 310
Helix 50	AF5	D	414	418	Right-handed 310
Helix 51	AF6	D	424	428	Right-handed 310
Helix 52	AF7	D	434	447	Right-handed alpha
Helix 53	AF8	D	460	471	Right-handed alpha
Helix 54	AF9	D	474	481	Right-handed alpha
Helix 55	AG1	D	497	501	Right-handed 310
Helix 56	AG2	D	524	528	Right-handed 310
Helix 57	AG3	D	605	623	Right-handed alpha
Helix 58	AG4	D	660	665	Right-handed alpha
Helix 59	AG5	D	678	687	Right-handed alpha
Helix 60	AG6	D	701	706	Right-handed alpha
Helix 61	AG7	D	780	785	Right-handed alpha
Helix 62	AG8	D	786	788	Right-handed 310
Helix 63	AG9	D	826	831	Right-handed alpha
Helix 64	AH1	D	854	860	Right-handed alpha
Helix 65	AH2	D	926	943	Right-handed alpha
Helix 66	AH3	D	948	967	Right-handed alpha
Helix 67	AH4	D	972	985	Right-handed alpha
Helix 68	AH5	B	246	251	Right-handed alpha
Helix 69	AH6	B	309	316	Right-handed alpha
Helix 70	AH7	B	356	360	Right-handed 310
Helix 71	AH8	B	414	420	Right-handed alpha
Helix 72	AH9	B	432	436	Right-handed 310

There are 32 sheets in PDB entry 8A49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	261	266	anti-parallel
Strand 3	A	300	305	anti-parallel
Strand 4	A	288	289	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	273	279	anti-parallel
Strand 3	A	319	325	anti-parallel
Strand 4	A	332	336	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	391	393	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	397	398	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	423	428	anti-parallel
Strand 3	A	437	441	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	383	first strand
Strand 2	A	386	387	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	119	first strand
Strand 2	C	146	150	parallel
Strand 3	C	178	184	parallel
Strand 4	C	229	234	parallel
Strand 5	C	275	280	parallel
Strand 6	C	299	303	parallel
Strand 7	C	341	344	parallel
Strand 8	C	398	402	parallel
Strand 9	C	113	119	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	315	first strand
Strand 2	C	320	322	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	484	487	first strand
Strand 2	C	506	510	parallel
Strand 3	C	556	560	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	531	first strand
Strand 2	C	551	552	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	592	593	first strand
Strand 2	C	629	630	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	651	first strand
Strand 2	C	756	758	parallel
Strand 3	C	735	742	anti-parallel
Strand 4	C	713	718	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	651	first strand
Strand 2	C	756	758	parallel
Strand 3	C	735	742	anti-parallel
Strand 4	C	752	753	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	657	659	first strand
Strand 2	C	728	730	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	766	767	first strand
Strand 2	C	917	923	anti-parallel
Strand 3	C	817	825	anti-parallel
Strand 4	C	885	893	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	773	776	first strand
Strand 2	C	806	812	anti-parallel
Strand 3	C	897	903	anti-parallel
Strand 4	C	841	847	anti-parallel
Strand 5	C	870	877	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	119	first strand
Strand 2	D	146	150	parallel
Strand 3	D	178	184	parallel
Strand 4	D	229	234	parallel
Strand 5	D	275	280	parallel
Strand 6	D	299	303	parallel
Strand 7	D	341	344	parallel
Strand 8	D	398	402	parallel
Strand 9	D	113	119	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	320	322	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	484	487	first strand
Strand 2	D	506	510	parallel
Strand 3	D	556	560	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	531	first strand
Strand 2	D	551	552	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	592	593	first strand
Strand 2	D	629	630	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	651	first strand
Strand 2	D	756	758	parallel
Strand 3	D	735	742	anti-parallel
Strand 4	D	713	718	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	651	first strand
Strand 2	D	756	758	parallel
Strand 3	D	735	742	anti-parallel
Strand 4	D	752	753	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	657	659	first strand
Strand 2	D	728	730	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	766	767	first strand
Strand 2	D	917	923	anti-parallel
Strand 3	D	817	825	anti-parallel
Strand 4	D	885	893	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	773	776	first strand
Strand 2	D	806	812	anti-parallel
Strand 3	D	897	903	anti-parallel
Strand 4	D	841	847	anti-parallel
Strand 5	D	870	877	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	261	266	anti-parallel
Strand 3	B	300	305	anti-parallel
Strand 4	B	288	289	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	273	279	anti-parallel
Strand 3	B	319	325	anti-parallel
Strand 4	B	332	336	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	391	393	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	397	398	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	380	first strand
Strand 2	B	423	428	anti-parallel
Strand 3	B	437	441	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	383	first strand
Strand 2	B	386	387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A49

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A49