Analysis of interatomic Contacts of Structural Units in PDB entry:
8A56

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A56 entry

There are 2 chains in PDB entry 8A56 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PRO 543
B	GLY 1	GLY 111

There are 44 helices in PDB entry 8A56. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	23	Right-handed alpha
Helix 2	AA2	A	40	42	Right-handed 310
Helix 3	AA3	A	43	49	Right-handed alpha
Helix 4	AA4	A	54	59	Right-handed 310
Helix 5	AA5	A	62	71	Right-handed alpha
Helix 6	AA6	A	133	142	Right-handed alpha
Helix 7	AA7	A	157	170	Right-handed alpha
Helix 8	AA8	A	188	202	Right-handed alpha
Helix 9	AA9	A	217	219	Right-handed 310
Helix 10	AB1	A	245	251	Right-handed alpha
Helix 11	AB2	A	256	260	Right-handed 310
Helix 12	AB3	A	278	281	Right-handed 310
Helix 13	AB4	A	296	312	Right-handed alpha
Helix 14	AB5	A	340	347	Right-handed alpha
Helix 15	AB6	A	394	408	Right-handed alpha
Helix 16	AB7	A	414	418	Right-handed 310
Helix 17	AB8	A	431	445	Right-handed alpha
Helix 18	AB9	A	455	462	Right-handed alpha
Helix 19	AC1	A	487	495	Right-handed alpha
Helix 20	AC2	A	496	498	Right-handed 310
Helix 21	AC3	A	510	524	Right-handed alpha
Helix 22	AC4	A	533	542	Right-handed alpha
Helix 23	AC5	B	9	23	Right-handed alpha
Helix 24	AC6	B	40	42	Right-handed 310
Helix 25	AC7	B	43	49	Right-handed alpha
Helix 26	AC8	B	54	59	Right-handed 310
Helix 27	AC9	B	62	71	Right-handed alpha
Helix 28	AD1	B	133	144	Right-handed alpha
Helix 29	AD2	B	157	170	Right-handed alpha
Helix 30	AD3	B	188	202	Right-handed alpha
Helix 31	AD4	B	245	251	Right-handed alpha
Helix 32	AD5	B	256	260	Right-handed 310
Helix 33	AD6	B	278	281	Right-handed 310
Helix 34	AD7	B	296	312	Right-handed alpha
Helix 35	AD8	B	340	347	Right-handed alpha
Helix 36	AD9	B	394	408	Right-handed alpha
Helix 37	AE1	B	414	418	Right-handed 310
Helix 38	AE2	B	431	445	Right-handed alpha
Helix 39	AE3	B	452	454	Right-handed 310
Helix 40	AE4	B	455	462	Right-handed alpha
Helix 41	AE5	B	487	495	Right-handed alpha
Helix 42	AE6	B	496	498	Right-handed 310
Helix 43	AE7	B	510	524	Right-handed alpha
Helix 44	AE8	B	533	542	Right-handed alpha

There are 16 sheets in PDB entry 8A56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	27	32	parallel
Strand 3	A	2	6	parallel
Strand 4	A	105	108	parallel
Strand 5	A	274	276	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	89	94	anti-parallel
Strand 3	A	97	102	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	241	243	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	234	237	parallel
Strand 3	A	150	154	parallel
Strand 4	A	173	178	parallel
Strand 5	A	205	208	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	221	224	anti-parallel
Strand 3	A	229	231	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	290	292	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	329	first strand
Strand 2	A	332	338	anti-parallel
Strand 3	A	384	391	anti-parallel
Strand 4	A	370	377	anti-parallel
Strand 5	A	352	359	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	A	528	531	parallel
Strand 3	A	504	507	parallel
Strand 4	A	465	468	parallel
Strand 5	A	483	485	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	27	32	parallel
Strand 3	B	2	6	parallel
Strand 4	B	105	108	parallel
Strand 5	B	274	276	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	89	94	anti-parallel
Strand 3	B	97	102	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	241	243	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	234	237	parallel
Strand 3	B	150	154	parallel
Strand 4	B	173	177	parallel
Strand 5	B	205	207	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	221	224	anti-parallel
Strand 3	B	229	231	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	290	292	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	329	first strand
Strand 2	B	332	338	anti-parallel
Strand 3	B	384	391	anti-parallel
Strand 4	B	370	377	anti-parallel
Strand 5	B	352	359	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	528	531	parallel
Strand 3	B	504	507	parallel
Strand 4	B	465	468	parallel
Strand 5	B	483	485	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A56

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A56