Analysis of interatomic Contacts of Structural Units in PDB entry:
8A5A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A5A entry

There are 5 chains in PDB entry 8A5A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	PRO 451	GLU 560
U	LYS 165	TYR 881
V	SER 3	PHE 375
W	LEU 6	ARG 489
X	SER 35	ARG 74

There are 81 helices in PDB entry 8A5A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	458	482	Right-handed alpha
Helix 2	AA2	G	484	514	Right-handed alpha
Helix 3	AA3	G	515	519	Right-handed 310
Helix 4	AA4	G	521	560	Right-handed alpha
Helix 5	AA5	U	166	178	Right-handed alpha
Helix 6	AA6	U	215	228	Right-handed alpha
Helix 7	AA7	U	300	302	Right-handed 310
Helix 8	AA8	U	320	341	Right-handed alpha
Helix 9	AA9	U	348	360	Right-handed alpha
Helix 10	AB1	U	366	370	Right-handed 310
Helix 11	AB2	U	387	392	Right-handed 310
Helix 12	AB3	U	417	434	Right-handed alpha
Helix 13	AB4	U	444	448	Right-handed 310
Helix 14	AB5	U	459	472	Right-handed alpha
Helix 15	AB6	U	484	493	Right-handed alpha
Helix 16	AB7	U	520	523	Right-handed 310
Helix 17	AB8	U	529	544	Right-handed alpha
Helix 18	AB9	U	555	570	Right-handed alpha
Helix 19	AC1	U	573	577	Right-handed 310
Helix 20	AC2	U	602	610	Right-handed alpha
Helix 21	AC3	U	611	613	Right-handed 310
Helix 22	AC4	U	614	621	Right-handed alpha
Helix 23	AC5	U	629	633	Right-handed 310
Helix 24	AC6	U	650	658	Right-handed alpha
Helix 25	AC7	U	661	665	Right-handed 310
Helix 26	AC8	U	667	676	Right-handed alpha
Helix 27	AC9	U	677	688	Right-handed alpha
Helix 28	AD1	U	688	693	Right-handed alpha
Helix 29	AD2	U	702	716	Right-handed alpha
Helix 30	AD3	U	717	718	Right-handed 310
Helix 31	AD4	U	719	721	Right-handed 310
Helix 32	AD5	U	722	728	Right-handed alpha
Helix 33	AD6	U	734	739	Right-handed 310
Helix 34	AD7	U	741	754	Right-handed alpha
Helix 35	AD8	U	755	760	Right-handed alpha
Helix 36	AD9	U	762	781	Right-handed alpha
Helix 37	AE1	U	788	816	Right-handed alpha
Helix 38	AE2	U	818	823	Right-handed 310
Helix 39	AE3	U	840	851	Right-handed alpha
Helix 40	AE4	U	852	858	Right-handed 310
Helix 41	AE5	U	862	869	Right-handed alpha
Helix 42	AE6	U	870	875	Right-handed 310
Helix 43	AE7	V	55	61	Right-handed alpha
Helix 44	AE8	V	78	92	Right-handed alpha
Helix 45	AE9	V	97	101	Right-handed 310
Helix 46	AF1	V	112	128	Right-handed alpha
Helix 47	AF2	V	137	144	Right-handed alpha
Helix 48	AF3	V	172	175	Right-handed 310
Helix 49	AF4	V	181	195	Right-handed alpha
Helix 50	AF5	V	202	217	Right-handed alpha
Helix 51	AF6	V	222	233	Right-handed alpha
Helix 52	AF7	V	252	260	Right-handed alpha
Helix 53	AF8	V	261	262	Right-handed 310
Helix 54	AF9	V	263	268	Right-handed 310
Helix 55	AG1	V	273	283	Right-handed alpha
Helix 56	AG2	V	289	295	Right-handed alpha
Helix 57	AG3	V	301	306	Right-handed 310
Helix 58	AG4	V	308	321	Right-handed alpha
Helix 59	AG5	V	337	347	Right-handed alpha
Helix 60	AG6	V	351	356	Right-handed alpha
Helix 61	AG7	V	359	366	Right-handed alpha
Helix 62	AG8	V	367	372	Right-handed 310
Helix 63	AG9	W	82	97	Right-handed alpha
Helix 64	AH1	W	117	130	Right-handed alpha
Helix 65	AH2	W	141	151	Right-handed alpha
Helix 66	AH3	W	186	197	Right-handed alpha
Helix 67	AH4	W	205	207	Right-handed 310
Helix 68	AH5	W	226	236	Right-handed alpha
Helix 69	AH6	W	237	246	Right-handed alpha
Helix 70	AH7	W	258	265	Right-handed alpha
Helix 71	AH8	W	281	291	Right-handed alpha
Helix 72	AH9	W	307	311	Right-handed 310
Helix 73	AI1	W	384	396	Right-handed alpha
Helix 74	AI2	W	397	399	Right-handed 310
Helix 75	AI3	W	400	406	Right-handed alpha
Helix 76	AI4	W	419	432	Right-handed alpha
Helix 77	AI5	W	446	462	Right-handed alpha
Helix 78	AI6	W	464	469	Right-handed 310
Helix 79	AI7	W	471	479	Right-handed alpha
Helix 80	AI8	W	479	487	Right-handed alpha
Helix 81	AI9	X	66	73	Right-handed alpha

There are 20 sheets in PDB entry 8A5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	289	292	first strand
Strand 2	U	277	281	anti-parallel
Strand 3	U	268	272	anti-parallel
Strand 4	U	449	454	parallel
Strand 5	U	478	483	parallel
Strand 6	U	860	861	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	384	385	first strand
Strand 2	U	295	298	anti-parallel
Strand 3	U	397	400	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	363	365	first strand
Strand 2	U	593	600	anti-parallel
Strand 3	U	580	585	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	403	404	first strand
Strand 2	U	407	408	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	517	518	first strand
Strand 2	U	508	514	anti-parallel
Strand 3	U	524	526	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	517	518	first strand
Strand 2	U	508	514	anti-parallel
Strand 3	U	498	503	anti-parallel
Strand 4	U	730	732	parallel
Strand 5	U	829	830	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	29	32	first strand
Strand 2	V	16	21	anti-parallel
Strand 3	V	8	11	anti-parallel
Strand 4	V	103	107	parallel
Strand 5	V	131	136	parallel
Strand 6	V	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	53	54	first strand
Strand 2	V	35	38	anti-parallel
Strand 3	V	65	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	71	72	first strand
Strand 2	V	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	169	170	first strand
Strand 2	V	160	166	anti-parallel
Strand 3	V	176	178	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	169	170	first strand
Strand 2	V	160	166	anti-parallel
Strand 3	V	150	155	anti-parallel
Strand 4	V	297	300	parallel
Strand 5	V	329	330	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	238	241	first strand
Strand 2	V	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	38	41	first strand
Strand 2	W	25	30	anti-parallel
Strand 3	W	17	20	anti-parallel
Strand 4	W	107	110	parallel
Strand 5	W	136	139	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	55	56	first strand
Strand 2	W	43	47	anti-parallel
Strand 3	W	69	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	75	76	first strand
Strand 2	W	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	174	175	first strand
Strand 2	W	165	171	anti-parallel
Strand 3	W	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	174	175	first strand
Strand 2	W	165	171	anti-parallel
Strand 3	W	155	160	anti-parallel
Strand 4	W	408	411	parallel
Strand 5	W	439	440	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	209	211	first strand
Strand 2	W	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	270	271	first strand
Strand 2	W	277	278	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	41	51	first strand
Strand 2	X	57	65	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A5A

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A5A