Analysis of interatomic Contacts of Structural Units in PDB entry:
8A5D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A5D entry

There are 5 chains in PDB entry 8A5D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	PHE 722	GLU 808
U	SER 6	TYR 747
V	GLU 4	PHE 375
W	ALA 13	ARG 466
X	ALA 160	PRO 197

There are 72 helices in PDB entry 8A5D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	724	741	Right-handed alpha
Helix 2	AA2	G	741	775	Right-handed alpha
Helix 3	AA3	G	779	808	Right-handed alpha
Helix 4	AA4	U	7	14	Right-handed alpha
Helix 5	AA5	U	45	48	Right-handed 310
Helix 6	AA6	U	49	64	Right-handed alpha
Helix 7	AA7	U	102	104	Right-handed 310
Helix 8	AA8	U	157	163	Right-handed alpha
Helix 9	AA9	U	163	184	Right-handed alpha
Helix 10	AB1	U	191	202	Right-handed alpha
Helix 11	AB2	U	237	242	Right-handed alpha
Helix 12	AB3	U	264	267	Right-handed 310
Helix 13	AB4	U	269	288	Right-handed alpha
Helix 14	AB5	U	293	300	Right-handed 310
Helix 15	AB6	U	311	325	Right-handed alpha
Helix 16	AB7	U	336	345	Right-handed alpha
Helix 17	AB8	U	371	374	Right-handed 310
Helix 18	AB9	U	380	395	Right-handed alpha
Helix 19	AC1	U	406	421	Right-handed alpha
Helix 20	AC2	U	424	428	Right-handed 310
Helix 21	AC3	U	453	461	Right-handed alpha
Helix 22	AC4	U	462	468	Right-handed 310
Helix 23	AC5	U	498	509	Right-handed alpha
Helix 24	AC6	U	620	629	Right-handed alpha
Helix 25	AC7	U	636	650	Right-handed alpha
Helix 26	AC8	U	652	661	Right-handed alpha
Helix 27	AC9	U	667	672	Right-handed 310
Helix 28	AD1	U	674	687	Right-handed alpha
Helix 29	AD2	U	707	719	Right-handed alpha
Helix 30	AD3	U	728	735	Right-handed alpha
Helix 31	AD4	U	736	743	Right-handed alpha
Helix 32	AD5	V	55	61	Right-handed alpha
Helix 33	AD6	V	78	92	Right-handed alpha
Helix 34	AD7	V	97	101	Right-handed 310
Helix 35	AD8	V	112	126	Right-handed alpha
Helix 36	AD9	V	137	145	Right-handed alpha
Helix 37	AE1	V	172	175	Right-handed 310
Helix 38	AE2	V	181	196	Right-handed alpha
Helix 39	AE3	V	202	217	Right-handed alpha
Helix 40	AE4	V	222	230	Right-handed alpha
Helix 41	AE5	V	252	260	Right-handed alpha
Helix 42	AE6	V	261	262	Right-handed 310
Helix 43	AE7	V	263	268	Right-handed 310
Helix 44	AE8	V	273	283	Right-handed alpha
Helix 45	AE9	V	289	295	Right-handed alpha
Helix 46	AF1	V	301	305	Right-handed 310
Helix 47	AF2	V	308	321	Right-handed alpha
Helix 48	AF3	V	334	336	Right-handed 310
Helix 49	AF4	V	337	347	Right-handed alpha
Helix 50	AF5	V	348	355	Right-handed 310
Helix 51	AF6	V	359	366	Right-handed alpha
Helix 52	AF7	V	368	374	Right-handed alpha
Helix 53	AF8	W	85	98	Right-handed alpha
Helix 54	AF9	W	155	171	Right-handed alpha
Helix 55	AG1	W	180	188	Right-handed alpha
Helix 56	AG2	W	215	218	Right-handed 310
Helix 57	AG3	W	224	239	Right-handed alpha
Helix 58	AG4	W	247	249	Right-handed 310
Helix 59	AG5	W	275	294	Right-handed alpha
Helix 60	AG6	W	308	314	Right-handed alpha
Helix 61	AG7	W	333	341	Right-handed alpha
Helix 62	AG8	W	360	363	Right-handed 310
Helix 63	AG9	W	364	374	Right-handed alpha
Helix 64	AH1	W	375	376	Right-handed 310
Helix 65	AH2	W	377	379	Right-handed 310
Helix 66	AH3	W	380	386	Right-handed alpha
Helix 67	AH4	W	392	397	Right-handed 310
Helix 68	AH5	W	399	412	Right-handed alpha
Helix 69	AH6	W	431	440	Right-handed alpha
Helix 70	AH7	W	441	448	Right-handed 310
Helix 71	AH8	W	452	457	Right-handed alpha
Helix 72	AH9	W	461	466	Right-handed alpha

There are 19 sheets in PDB entry 8A5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	127	130	first strand
Strand 2	U	115	120	anti-parallel
Strand 3	U	106	110	anti-parallel
Strand 4	U	301	306	parallel
Strand 5	U	330	335	parallel
Strand 6	U	726	727	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	235	236	first strand
Strand 2	U	133	136	anti-parallel
Strand 3	U	251	254	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	206	207	first strand
Strand 2	U	442	451	anti-parallel
Strand 3	U	431	439	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	257	258	first strand
Strand 2	U	261	262	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	368	369	first strand
Strand 2	U	359	365	anti-parallel
Strand 3	U	375	377	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	368	369	first strand
Strand 2	U	359	365	anti-parallel
Strand 3	U	348	354	anti-parallel
Strand 4	U	663	666	parallel
Strand 5	U	696	698	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	29	32	first strand
Strand 2	V	16	21	anti-parallel
Strand 3	V	8	11	anti-parallel
Strand 4	V	103	107	parallel
Strand 5	V	131	136	parallel
Strand 6	V	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	53	54	first strand
Strand 2	V	35	38	anti-parallel
Strand 3	V	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	71	72	first strand
Strand 2	V	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	169	170	first strand
Strand 2	V	160	166	anti-parallel
Strand 3	V	176	178	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	169	170	first strand
Strand 2	V	160	166	anti-parallel
Strand 3	V	150	155	anti-parallel
Strand 4	V	297	300	parallel
Strand 5	V	329	330	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	238	241	first strand
Strand 2	V	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	45	48	first strand
Strand 2	W	32	37	anti-parallel
Strand 3	W	24	28	anti-parallel
Strand 4	W	146	150	parallel
Strand 5	W	174	179	parallel
Strand 6	W	450	451	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	58	59	first strand
Strand 2	W	50	53	anti-parallel
Strand 3	W	72	75	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	212	213	first strand
Strand 2	W	203	209	anti-parallel
Strand 3	W	219	221	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	212	213	first strand
Strand 2	W	203	209	anti-parallel
Strand 3	W	193	198	anti-parallel
Strand 4	W	388	391	parallel
Strand 5	W	419	421	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	251	255	first strand
Strand 2	W	264	267	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	319	322	first strand
Strand 2	W	328	331	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	172	179	first strand
Strand 2	X	185	192	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A5D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A5D