Analysis of interatomic Contacts of Structural Units in PDB entry:
8A5E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A5E entry

There are 4 chains in PDB entry 8A5E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 583
B	VAL 153	ALA 599
C	MET 1	TYR 156
D	MET 1	VAL 583

There are 89 helices in PDB entry 8A5E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	27	Right-handed alpha
Helix 2	AA2	A	78	93	Right-handed alpha
Helix 3	AA3	A	99	103	Right-handed 310
Helix 4	AA4	A	105	108	Right-handed 310
Helix 5	AA5	A	109	119	Right-handed alpha
Helix 6	AA6	A	145	148	Right-handed 310
Helix 7	AA7	A	152	161	Right-handed alpha
Helix 8	AA8	A	172	176	Right-handed 310
Helix 9	AA9	A	180	184	Right-handed 310
Helix 10	AB1	A	185	189	Right-handed 310
Helix 11	AB2	A	195	200	Right-handed alpha
Helix 12	AB3	A	211	220	Right-handed alpha
Helix 13	AB4	A	238	243	Right-handed 310
Helix 14	AB5	A	250	261	Right-handed alpha
Helix 15	AB6	A	269	291	Right-handed alpha
Helix 16	AB7	A	301	311	Right-handed alpha
Helix 17	AB8	A	312	316	Right-handed 310
Helix 18	AB9	A	324	342	Right-handed alpha
Helix 19	AC1	A	344	346	Right-handed 310
Helix 20	AC2	A	358	365	Right-handed alpha
Helix 21	AC3	A	381	393	Right-handed alpha
Helix 22	AC4	A	395	399	Right-handed 310
Helix 23	AC5	A	412	417	Right-handed alpha
Helix 24	AC6	A	422	438	Right-handed alpha
Helix 25	AC7	A	475	488	Right-handed alpha
Helix 26	AC8	A	505	509	Right-handed 310
Helix 27	AC9	A	516	521	Right-handed alpha
Helix 28	AD1	A	524	539	Right-handed alpha
Helix 29	AD2	A	549	559	Right-handed alpha
Helix 30	AD3	A	565	572	Right-handed alpha
Helix 31	AD4	B	154	162	Right-handed alpha
Helix 32	AD5	B	173	183	Right-handed alpha
Helix 33	AD6	B	205	214	Right-handed alpha
Helix 34	AD7	B	214	230	Right-handed alpha
Helix 35	AD8	B	242	260	Right-handed alpha
Helix 36	AD9	B	265	269	Right-handed 310
Helix 37	AE1	B	284	288	Right-handed 310
Helix 38	AE2	B	290	298	Right-handed alpha
Helix 39	AE3	B	314	318	Right-handed 310
Helix 40	AE4	B	325	329	Right-handed alpha
Helix 41	AE5	B	330	338	Right-handed alpha
Helix 42	AE6	B	338	344	Right-handed alpha
Helix 43	AE7	B	375	381	Right-handed alpha
Helix 44	AE8	B	387	391	Right-handed 310
Helix 45	AE9	B	400	403	Right-handed 310
Helix 46	AF1	B	409	411	Right-handed 310
Helix 47	AF2	B	416	423	Right-handed alpha
Helix 48	AF3	B	440	454	Right-handed alpha
Helix 49	AF4	B	460	479	Right-handed alpha
Helix 50	AF5	B	485	500	Right-handed alpha
Helix 51	AF6	B	503	508	Right-handed alpha
Helix 52	AF7	B	510	520	Right-handed alpha
Helix 53	AF8	B	520	529	Right-handed alpha
Helix 54	AF9	B	555	561	Right-handed alpha
Helix 55	AG1	B	585	591	Right-handed alpha
Helix 56	AG2	C	10	20	Right-handed alpha
Helix 57	AG3	C	26	39	Right-handed alpha
Helix 58	AG4	C	42	54	Right-handed alpha
Helix 59	AG5	C	56	67	Right-handed alpha
Helix 60	AG6	C	85	91	Right-handed alpha
Helix 61	AG7	C	92	105	Right-handed alpha
Helix 62	AG8	C	147	155	Right-handed alpha
Helix 63	AG9	D	20	27	Right-handed alpha
Helix 64	AH1	D	78	93	Right-handed alpha
Helix 65	AH2	D	99	103	Right-handed 310
Helix 66	AH3	D	105	108	Right-handed 310
Helix 67	AH4	D	109	119	Right-handed alpha
Helix 68	AH5	D	152	161	Right-handed alpha
Helix 69	AH6	D	172	176	Right-handed 310
Helix 70	AH7	D	180	184	Right-handed 310
Helix 71	AH8	D	195	200	Right-handed alpha
Helix 72	AH9	D	211	220	Right-handed alpha
Helix 73	AI1	D	237	243	Right-handed 310
Helix 74	AI2	D	250	261	Right-handed alpha
Helix 75	AI3	D	269	290	Right-handed alpha
Helix 76	AI4	D	301	312	Right-handed alpha
Helix 77	AI5	D	313	319	Right-handed 310
Helix 78	AI6	D	324	342	Right-handed alpha
Helix 79	AI7	D	358	365	Right-handed alpha
Helix 80	AI8	D	381	393	Right-handed alpha
Helix 81	AI9	D	412	417	Right-handed alpha
Helix 82	AJ1	D	422	438	Right-handed alpha
Helix 83	AJ2	D	475	489	Right-handed alpha
Helix 84	AJ3	D	505	509	Right-handed 310
Helix 85	AJ4	D	516	523	Right-handed alpha
Helix 86	AJ5	D	524	539	Right-handed alpha
Helix 87	AJ6	D	545	548	Right-handed 310
Helix 88	AJ7	D	549	559	Right-handed alpha
Helix 89	AJ8	D	565	573	Right-handed alpha

There are 20 sheets in PDB entry 8A5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	11	16	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	51	54	anti-parallel
Strand 3	A	74	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	206	208	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	170	first strand
Strand 2	A	177	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	225	230	parallel
Strand 3	A	348	353	parallel
Strand 4	A	378	380	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	496	500	parallel
Strand 3	A	466	474	parallel
Strand 4	A	455	463	anti-parallel
Strand 5	A	447	448	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	370	first strand
Strand 2	A	373	374	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	280	first strand
Strand 2	B	233	239	parallel
Strand 3	B	192	196	parallel
Strand 4	B	320	324	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	371	first strand
Strand 2	B	353	360	anti-parallel
Strand 3	B	431	436	parallel
Strand 4	B	393	398	anti-parallel
Strand 5	B	404	407	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	546	first strand
Strand 2	B	596	599	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	567	first strand
Strand 2	B	575	576	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	78	82	parallel
Strand 3	C	133	136	anti-parallel
Strand 4	C	139	142	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	8	first strand
Strand 2	D	11	16	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	42	43	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	51	54	anti-parallel
Strand 3	D	74	75	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	206	208	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	170	first strand
Strand 2	D	177	179	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	268	first strand
Strand 2	D	225	230	parallel
Strand 3	D	348	353	parallel
Strand 4	D	378	380	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	297	first strand
Strand 2	D	496	500	parallel
Strand 3	D	466	474	parallel
Strand 4	D	455	463	anti-parallel
Strand 5	D	447	448	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	370	first strand
Strand 2	D	373	374	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A5E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A5E