Analysis of interatomic Contacts of Structural Units in PDB entry:
8A5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A5J entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8A5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 127ASP 275
A
 MET 277ASN 281
A
 VAL 283GLN 408
B
 VAL 131ASP 275
B
 MET 277ASN 281
B
 VAL 283GLN 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8A5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
165 178Right-handed alpha
Helix 2
AA2
A
209 217Right-handed alpha
Helix 3
AA3
A
221 242Right-handed alpha
Helix 4
AA4
A
250 252Right-handed 310
Helix 5
AA5
A
286 290Right-handed 310
Helix 6
AA6
A
291 296Right-handed alpha
Helix 7
AA7
A
303 319Right-handed alpha
Helix 8
AA8
A
327 335Right-handed alpha
Helix 9
AA9
A
345 349Right-handed 310
Helix 10
AB1
A
350 361Right-handed alpha
Helix 11
AB2
A
370 375Right-handed alpha
Helix 12
AB3
A
377 382Right-handed alpha
Helix 13
AB4
A
385 388Right-handed 310
Helix 14
AB5
A
389 407Right-handed alpha
Helix 15
AB6
B
169 178Right-handed alpha
Helix 16
AB7
B
209 217Right-handed alpha
Helix 17
AB8
B
221 242Right-handed alpha
Helix 18
AB9
B
250 252Right-handed 310
Helix 19
AC1
B
286 290Right-handed 310
Helix 20
AC2
B
291 296Right-handed alpha
Helix 21
AC3
B
303 319Right-handed alpha
Helix 22
AC4
B
327 335Right-handed alpha
Helix 23
AC5
B
345 349Right-handed 310
Helix 24
AC6
B
350 361Right-handed alpha
Helix 25
AC7
B
370 375Right-handed alpha
Helix 26
AC8
B
377 382Right-handed alpha
Helix 27
AC9
B
385 388Right-handed 310
Helix 28
AD1
B
389 407Right-handed alpha
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There are 6 sheets in PDB entry 8A5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
143 148anti-parallel
Strand 3
A
154 160anti-parallel
Strand 4
A
196 202anti-parallel
Strand 5
A
187 193anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
254 256anti-parallel
Strand 3
A
262 264anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
271 272anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
201 202anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
254 256anti-parallel
Strand 3
B
262 264anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
271 272anti-parallel
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