Analysis of interatomic Contacts of Structural Units in PDB entry:
8A5T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A5T entry

There are 2 chains in PDB entry 8A5T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 651
B	MET 1	THR 651

There are 40 helices in PDB entry 8A5T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	74	78	Right-handed 310
Helix 3	AA3	A	85	96	Right-handed alpha
Helix 4	AA4	A	100	112	Right-handed alpha
Helix 5	AA5	A	120	139	Right-handed alpha
Helix 6	AA6	A	207	218	Right-handed alpha
Helix 7	AA7	A	249	256	Right-handed alpha
Helix 8	AA8	A	268	284	Right-handed alpha
Helix 9	AA9	A	285	299	Right-handed alpha
Helix 10	AB1	A	310	316	Right-handed alpha
Helix 11	AB2	A	328	332	Right-handed 310
Helix 12	AB3	A	345	357	Right-handed alpha
Helix 13	AB4	A	359	384	Right-handed alpha
Helix 14	AB5	A	401	415	Right-handed alpha
Helix 15	AB6	A	430	434	Right-handed 310
Helix 16	AB7	A	505	520	Right-handed alpha
Helix 17	AB8	A	549	554	Right-handed 310
Helix 18	AB9	A	612	616	Right-handed 310
Helix 19	AC1	A	630	634	Right-handed 310
Helix 20	AC2	B	2	7	Right-handed alpha
Helix 21	AC3	B	9	11	Right-handed 310
Helix 22	AC4	B	85	97	Right-handed alpha
Helix 23	AC5	B	103	112	Right-handed alpha
Helix 24	AC6	B	120	139	Right-handed alpha
Helix 25	AC7	B	207	218	Right-handed alpha
Helix 26	AC8	B	249	256	Right-handed alpha
Helix 27	AC9	B	261	265	Right-handed 310
Helix 28	AD1	B	268	284	Right-handed alpha
Helix 29	AD2	B	285	298	Right-handed alpha
Helix 30	AD3	B	307	309	Right-handed 310
Helix 31	AD4	B	310	315	Right-handed alpha
Helix 32	AD5	B	332	336	Right-handed 310
Helix 33	AD6	B	345	357	Right-handed alpha
Helix 34	AD7	B	359	385	Right-handed alpha
Helix 35	AD8	B	396	400	Right-handed 310
Helix 36	AD9	B	401	403	Right-handed 310
Helix 37	AE1	B	404	414	Right-handed alpha
Helix 38	AE2	B	430	434	Right-handed 310
Helix 39	AE3	B	506	520	Right-handed alpha
Helix 40	AE4	B	549	555	Right-handed alpha

There are 18 sheets in PDB entry 8A5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	25	38	anti-parallel
Strand 3	A	50	54	anti-parallel
Strand 4	A	302	303	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	25	38	anti-parallel
Strand 3	A	588	600	anti-parallel
Strand 4	A	604	605	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	319	322	parallel
Strand 3	A	428	429	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	155	157	anti-parallel
Strand 3	A	445	446	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	241	243	parallel
Strand 3	A	200	202	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	623	626	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	419	first strand
Strand 2	A	637	639	anti-parallel
Strand 3	A	646	648	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	502	504	anti-parallel
Strand 3	A	560	567	anti-parallel
Strand 4	A	521	526	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	16	first strand
Strand 2	B	609	612	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	52	54	anti-parallel
Strand 3	B	302	304	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	47	first strand
Strand 2	B	30	38	anti-parallel
Strand 3	B	591	596	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	319	321	parallel
Strand 3	B	428	429	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	239	243	parallel
Strand 3	B	200	202	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	344	first strand
Strand 2	B	623	626	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	637	640	anti-parallel
Strand 3	B	645	648	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	458	459	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	588	589	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	505	first strand
Strand 2	B	559	560	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A5T

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A5T