Analysis of interatomic Contacts of Structural Units in PDB entry:
8A66


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A66 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8A66 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 126ASN 281
A
 VAL 283GLU 405
B
 SER 120ASP 275
B
 MET 278ASN 282
B
 VAL 284ALA 370
B
 ALA 373GLU 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8A66. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
165 178Right-handed alpha
Helix 2
AA2
A
209 217Right-handed alpha
Helix 3
AA3
A
221 242Right-handed alpha
Helix 4
AA4
A
250 252Right-handed 310
Helix 5
AA5
A
286 290Right-handed 310
Helix 6
AA6
A
291 296Right-handed alpha
Helix 7
AA7
A
303 319Right-handed alpha
Helix 8
AA8
A
327 335Right-handed alpha
Helix 9
AA9
A
345 349Right-handed 310
Helix 10
AB1
A
350 361Right-handed alpha
Helix 11
AB2
A
364 368Right-handed 310
Helix 12
AB3
A
370 375Right-handed alpha
Helix 13
AB4
A
377 382Right-handed alpha
Helix 14
AB5
A
385 388Right-handed 310
Helix 15
AB6
A
389 405Right-handed alpha
Helix 16
AB7
B
124 128Right-handed alpha
Helix 17
AB8
B
166 179Right-handed alpha
Helix 18
AB9
B
209 217Right-handed alpha
Helix 19
AC1
B
221 242Right-handed alpha
Helix 20
AC2
B
250 252Right-handed 310
Helix 21
AC3
B
287 291Right-handed 310
Helix 22
AC4
B
292 297Right-handed alpha
Helix 23
AC5
B
304 320Right-handed alpha
Helix 24
AC6
B
328 336Right-handed alpha
Helix 25
AC7
B
346 350Right-handed 310
Helix 26
AC8
B
351 362Right-handed alpha
Helix 27
AC9
B
365 369Right-handed 310
Helix 28
AD1
B
371 377Right-handed alpha
Helix 29
AD2
B
379 384Right-handed alpha
Helix 30
AD3
B
387 390Right-handed 310
Helix 31
AD4
B
391 408Right-handed alpha
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There are 6 sheets in PDB entry 8A66. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
143 148anti-parallel
Strand 3
A
154 160anti-parallel
Strand 4
A
196 202anti-parallel
Strand 5
A
187 193anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
254 256anti-parallel
Strand 3
A
262 264anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
271 272anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 136first strand
Strand 2
B
143 148anti-parallel
Strand 3
B
154 160anti-parallel
Strand 4
B
196 202anti-parallel
Strand 5
B
187 193anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
254 256anti-parallel
Strand 3
B
262 264anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
271 272anti-parallel
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