Analysis of interatomic Contacts of Structural Units in PDB entry:
8A6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A6E entry

There are 2 chains in PDB entry 8A6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 402CYS 723
B
 MET 402CYS 723
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8A6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
434 466Right-handed alpha
Helix 2
AA2
A
471 491Right-handed alpha
Helix 3
AA3
A
491 502Right-handed alpha
Helix 4
AA4
A
506 542Right-handed alpha
Helix 5
AA5
A
550 570Right-handed alpha
Helix 6
AA6
A
571 574Right-handed 310
Helix 7
AA7
A
596 599Right-handed 310
Helix 8
AA8
A
600 612Right-handed alpha
Helix 9
AA9
A
613 629Right-handed alpha
Helix 10
AB1
A
647 679Right-handed alpha
Helix 11
AB2
A
686 696Right-handed alpha
Helix 12
AB3
A
697 700Right-handed 310
Helix 13
AB4
A
701 711Right-handed alpha
Helix 14
AB5
A
711 723Right-handed alpha
Helix 15
AB6
B
434 466Right-handed alpha
Helix 16
AB7
B
471 491Right-handed alpha
Helix 17
AB8
B
491 502Right-handed alpha
Helix 18
AB9
B
506 542Right-handed alpha
Helix 19
AC1
B
550 570Right-handed alpha
Helix 20
AC2
B
571 574Right-handed 310
Helix 21
AC3
B
596 599Right-handed 310
Helix 22
AC4
B
600 612Right-handed alpha
Helix 23
AC5
B
613 629Right-handed alpha
Helix 24
AC6
B
646 679Right-handed alpha
Helix 25
AC7
B
686 696Right-handed alpha
Helix 26
AC8
B
697 700Right-handed 310
Helix 27
AC9
B
701 711Right-handed alpha
Helix 28
AD1
B
711 723Right-handed alpha
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There are 4 sheets in PDB entry 8A6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
411 412anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 582first strand
Strand 2
A
587 590anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 406first strand
Strand 2
B
411 412anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
579 581first strand
Strand 2
B
588 590anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il