Analysis of interatomic Contacts of Structural Units in PDB entry:
8A6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A6J entry

There are 4 chains in PDB entry 8A6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 73	ARG 640
B	GLU 73	ARG 640
C	GLU 73	ARG 640
D	GLU 73	ARG 640

There are 65 helices in PDB entry 8A6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	79	Right-handed alpha
Helix 2	AA2	A	85	97	Right-handed alpha
Helix 3	AA3	A	176	189	Right-handed alpha
Helix 4	AA4	A	192	200	Right-handed alpha
Helix 5	AA5	A	218	224	Right-handed alpha
Helix 6	AA6	A	230	235	Right-handed 310
Helix 7	AA7	A	251	255	Right-handed 310
Helix 8	AA8	A	430	435	Right-handed 310
Helix 9	AA9	A	446	450	Right-handed alpha
Helix 10	AB1	A	470	472	Right-handed 310
Helix 11	AB2	A	534	539	Right-handed alpha
Helix 12	AB3	A	547	561	Right-handed alpha
Helix 13	AB4	A	570	586	Right-handed alpha
Helix 14	AB5	A	591	610	Right-handed alpha
Helix 15	AB6	A	612	621	Right-handed alpha
Helix 16	AB7	A	626	640	Right-handed alpha
Helix 17	AB8	B	74	79	Right-handed alpha
Helix 18	AB9	B	85	97	Right-handed alpha
Helix 19	AC1	B	176	189	Right-handed alpha
Helix 20	AC2	B	192	200	Right-handed alpha
Helix 21	AC3	B	218	224	Right-handed alpha
Helix 22	AC4	B	230	235	Right-handed 310
Helix 23	AC5	B	430	438	Right-handed alpha
Helix 24	AC6	B	446	450	Right-handed alpha
Helix 25	AC7	B	470	472	Right-handed 310
Helix 26	AC8	B	547	561	Right-handed alpha
Helix 27	AC9	B	571	586	Right-handed alpha
Helix 28	AD1	B	591	610	Right-handed alpha
Helix 29	AD2	B	612	621	Right-handed alpha
Helix 30	AD3	B	626	640	Right-handed alpha
Helix 31	AD4	C	74	79	Right-handed alpha
Helix 32	AD5	C	85	97	Right-handed alpha
Helix 33	AD6	C	136	139	Right-handed 310
Helix 34	AD7	C	176	189	Right-handed alpha
Helix 35	AD8	C	192	200	Right-handed alpha
Helix 36	AD9	C	218	224	Right-handed alpha
Helix 37	AE1	C	230	235	Right-handed 310
Helix 38	AE2	C	376	380	Right-handed 310
Helix 39	AE3	C	430	435	Right-handed alpha
Helix 40	AE4	C	436	438	Right-handed 310
Helix 41	AE5	C	446	450	Right-handed alpha
Helix 42	AE6	C	470	472	Right-handed 310
Helix 43	AE7	C	547	561	Right-handed alpha
Helix 44	AE8	C	570	586	Right-handed alpha
Helix 45	AE9	C	591	610	Right-handed alpha
Helix 46	AF1	C	612	621	Right-handed alpha
Helix 47	AF2	C	626	640	Right-handed alpha
Helix 48	AF3	D	74	79	Right-handed alpha
Helix 49	AF4	D	85	97	Right-handed alpha
Helix 50	AF5	D	135	140	Right-handed alpha
Helix 51	AF6	D	176	189	Right-handed alpha
Helix 52	AF7	D	192	200	Right-handed alpha
Helix 53	AF8	D	218	224	Right-handed alpha
Helix 54	AF9	D	230	235	Right-handed 310
Helix 55	AG1	D	251	255	Right-handed 310
Helix 56	AG2	D	430	435	Right-handed alpha
Helix 57	AG3	D	436	438	Right-handed 310
Helix 58	AG4	D	446	450	Right-handed alpha
Helix 59	AG5	D	470	472	Right-handed 310
Helix 60	AG6	D	547	561	Right-handed alpha
Helix 61	AG7	D	570	586	Right-handed alpha
Helix 62	AG8	D	591	610	Right-handed alpha
Helix 63	AG9	D	612	618	Right-handed alpha
Helix 64	AH1	D	619	621	Right-handed 310
Helix 65	AH2	D	626	640	Right-handed alpha

There are 30 sheets in PDB entry 8A6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	517	529	anti-parallel
Strand 3	A	237	250	anti-parallel
Strand 4	A	121	123	first strand
Strand 5	A	541	542	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	237	250	anti-parallel
Strand 3	A	517	529	anti-parallel
Strand 4	A	451	454	first strand
Strand 5	A	564	566	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	217	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	151	156	anti-parallel
Strand 4	A	504	510	anti-parallel
Strand 5	A	259	265	anti-parallel
Strand 6	A	444	445	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	419	425	anti-parallel
Strand 3	A	473	478	parallel
Strand 4	A	495	496	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	415	416	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	326	328	anti-parallel
Strand 3	A	298	300	anti-parallel
Strand 4	A	282	289	anti-parallel
Strand 5	A	404	410	anti-parallel
Strand 6	A	349	352	anti-parallel
Strand 7	A	359	363	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	342	first strand
Strand 2	A	368	373	anti-parallel
Strand 3	A	382	387	anti-parallel
Strand 4	A	392	397	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	134	first strand
Strand 2	B	517	529	anti-parallel
Strand 3	B	121	123	anti-parallel
Strand 4	B	541	542	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	517	529	anti-parallel
Strand 4	B	247	250	anti-parallel
Strand 5	B	451	453	anti-parallel
Strand 6	B	565	566	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	217	first strand
Strand 2	B	162	169	anti-parallel
Strand 3	B	151	156	anti-parallel
Strand 4	B	504	510	anti-parallel
Strand 5	B	259	265	anti-parallel
Strand 6	B	444	445	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	419	422	anti-parallel
Strand 3	B	473	475	parallel
Strand 4	B	494	496	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	414	416	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	288	first strand
Strand 2	B	404	410	anti-parallel
Strand 3	B	349	351	anti-parallel
Strand 4	B	360	363	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	326	328	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	342	first strand
Strand 2	B	368	373	anti-parallel
Strand 3	B	382	387	anti-parallel
Strand 4	B	392	397	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	C	527	529	anti-parallel
Strand 3	C	237	239	anti-parallel
Strand 4	C	467	468	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	134	first strand
Strand 2	C	517	523	anti-parallel
Strand 3	C	247	250	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	217	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	151	156	anti-parallel
Strand 4	C	504	510	anti-parallel
Strand 5	C	259	265	anti-parallel
Strand 6	C	444	445	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	419	425	anti-parallel
Strand 3	C	473	478	parallel
Strand 4	C	494	496	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	415	416	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand
Strand 2	C	282	289	anti-parallel
Strand 3	C	405	410	anti-parallel
Strand 4	C	349	352	anti-parallel
Strand 5	C	359	361	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	321	first strand
Strand 2	C	326	328	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	342	first strand
Strand 2	C	368	373	anti-parallel
Strand 3	C	382	387	anti-parallel
Strand 4	C	392	397	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	467	468	first strand
Strand 2	D	237	239	anti-parallel
Strand 3	D	527	529	anti-parallel
Strand 4	D	121	123	anti-parallel
Strand 5	D	541	542	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	134	first strand
Strand 2	D	517	524	anti-parallel
Strand 3	D	243	250	anti-parallel
Strand 4	D	451	452	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	217	first strand
Strand 2	D	162	169	anti-parallel
Strand 3	D	150	156	anti-parallel
Strand 4	D	504	512	anti-parallel
Strand 5	D	259	265	anti-parallel
Strand 6	D	444	445	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	274	first strand
Strand 2	D	419	425	anti-parallel
Strand 3	D	473	478	parallel
Strand 4	D	495	496	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	299	first strand
Strand 2	D	277	289	anti-parallel
Strand 3	D	405	416	anti-parallel
Strand 4	D	349	353	anti-parallel
Strand 5	D	358	363	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	321	first strand
Strand 2	D	326	329	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	342	first strand
Strand 2	D	368	373	anti-parallel
Strand 3	D	382	387	anti-parallel
Strand 4	D	392	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A6J