Analysis of interatomic Contacts of Structural Units in PDB entry:
8A6L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A6L entry

There are 3 chains in PDB entry 8A6L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 177ALA 630
B
 GLY 41VAL 492
C
 ILE 8ALA 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8A6L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
179 207Right-handed alpha
Helix 2
AA2
A
217 221Right-handed 310
Helix 3
AA3
A
229 235Right-handed alpha
Helix 4
AA4
A
240 245Right-handed alpha
Helix 5
AA5
A
247 255Right-handed alpha
Helix 6
AA6
A
286 301Right-handed alpha
Helix 7
AA7
A
323 341Right-handed alpha
Helix 8
AA8
A
349 353Right-handed 310
Helix 9
AA9
A
355 371Right-handed alpha
Helix 10
AB1
A
384 394Right-handed alpha
Helix 11
AB2
A
411 426Right-handed alpha
Helix 12
AB3
A
440 445Right-handed alpha
Helix 13
AB4
A
446 448Right-handed 310
Helix 14
AB5
A
449 460Right-handed alpha
Helix 15
AB6
A
504 507Right-handed 310
Helix 16
AB7
A
508 514Right-handed alpha
Helix 17
AB8
A
518 533Right-handed alpha
Helix 18
AB9
A
533 538Right-handed alpha
Helix 19
AC1
A
584 588Right-handed 310
Helix 20
AC2
B
43 54Right-handed alpha
Helix 21
AC3
B
56 70Right-handed alpha
Helix 22
AC4
B
71 100Right-handed alpha
Helix 23
AC5
B
107 113Right-handed alpha
Helix 24
AC6
B
118 129Right-handed alpha
Helix 25
AC7
B
129 148Right-handed alpha
Helix 26
AC8
B
157 179Right-handed alpha
Helix 27
AC9
B
179 212Right-handed alpha
Helix 28
AD1
B
230 243Right-handed alpha
Helix 29
AD2
B
250 255Right-handed alpha
Helix 30
AD3
B
260 291Right-handed alpha
Helix 31
AD4
B
292 297Right-handed alpha
Helix 32
AD5
B
301 311Right-handed alpha
Helix 33
AD6
B
317 347Right-handed alpha
Helix 34
AD7
B
364 379Right-handed alpha
Helix 35
AD8
B
383 412Right-handed alpha
Helix 36
AD9
B
424 445Right-handed alpha
Helix 37
AE1
B
447 468Right-handed alpha
Helix 38
AE2
B
476 492Right-handed alpha
Helix 39
AE3
C
23 28Right-handed alpha
Helix 40
AE4
C
145 159Right-handed alpha
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There are 5 sheets in PDB entry 8A6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 402first strand
Strand 2
A
375 380parallel
Strand 3
A
344 347parallel
Strand 4
A
303 307parallel
Strand 5
A
258 261parallel
Strand 6
A
224 228parallel
Strand 7
A
465 467parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 544first strand
Strand 2
A
550 556anti-parallel
Strand 3
A
562 568anti-parallel
Strand 4
A
621 626anti-parallel
Strand 5
A
592 598anti-parallel
Strand 6
A
609 610anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 575first strand
Strand 2
A
615 616anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
76 85anti-parallel
Strand 3
C
64 71anti-parallel
Strand 4
C
53 58anti-parallel
Strand 5
C
29 37anti-parallel
Strand 6
C
133 139anti-parallel
Strand 7
C
118 124anti-parallel
Strand 8
C
109 113anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
76 85anti-parallel
Strand 3
C
64 71anti-parallel
Strand 4
C
53 58anti-parallel
Strand 5
C
29 37anti-parallel
Strand 6
C
166 167anti-parallel
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