Analysis of interatomic Contacts of Structural Units in PDB entry:
8A6W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A6W entry

There are 2 chains in PDB entry 8A6W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 4GLY 398
E
 ALA 4ASP 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8A6W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
11 17Right-handed alpha
Helix 2
AA2
B
19 31Right-handed alpha
Helix 3
AA3
B
45 54Right-handed alpha
Helix 4
AA4
B
74 78Right-handed 310
Helix 5
AA5
B
81 91Right-handed alpha
Helix 6
AA6
B
92 94Right-handed 310
Helix 7
AA7
B
95 101Right-handed alpha
Helix 8
AA8
B
102 119Right-handed alpha
Helix 9
AA9
B
125 129Right-handed alpha
Helix 10
AB1
B
131 143Right-handed alpha
Helix 11
AB2
B
145 147Right-handed 310
Helix 12
AB3
B
148 161Right-handed alpha
Helix 13
AB4
B
168 196Right-handed alpha
Helix 14
AB5
B
200 207Right-handed alpha
Helix 15
AB6
B
216 233Right-handed alpha
Helix 16
AB7
B
234 249Right-handed alpha
Helix 17
AB8
B
249 259Right-handed alpha
Helix 18
AB9
B
262 275Right-handed alpha
Helix 19
AC1
B
305 310Right-handed alpha
Helix 20
AC2
B
342 361Right-handed alpha
Helix 21
AC3
E
11 17Right-handed alpha
Helix 22
AC4
E
19 31Right-handed alpha
Helix 23
AC5
E
45 54Right-handed alpha
Helix 24
AC6
E
74 78Right-handed 310
Helix 25
AC7
E
81 91Right-handed alpha
Helix 26
AC8
E
92 94Right-handed 310
Helix 27
AC9
E
95 101Right-handed alpha
Helix 28
AD1
E
102 116Right-handed alpha
Helix 29
AD2
E
125 129Right-handed alpha
Helix 30
AD3
E
131 143Right-handed alpha
Helix 31
AD4
E
145 147Right-handed 310
Helix 32
AD5
E
148 161Right-handed alpha
Helix 33
AD6
E
168 196Right-handed alpha
Helix 34
AD7
E
200 208Right-handed alpha
Helix 35
AD8
E
216 233Right-handed alpha
Helix 36
AD9
E
234 249Right-handed alpha
Helix 37
AE1
E
249 259Right-handed alpha
Helix 38
AE2
E
262 275Right-handed alpha
Helix 39
AE3
E
305 310Right-handed alpha
Helix 40
AE4
E
342 361Right-handed alpha
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There are 8 sheets in PDB entry 8A6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
41 43anti-parallel
Strand 3
B
300 304parallel
Strand 4
B
279 284anti-parallel
Strand 5
B
59 60anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
388 390anti-parallel
Strand 3
B
365 366anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
213 214anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 290first strand
Strand 2
B
293 295anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 35first strand
Strand 2
E
41 43anti-parallel
Strand 3
E
300 304parallel
Strand 4
E
279 284anti-parallel
Strand 5
E
59 60anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 124first strand
Strand 2
E
388 390anti-parallel
Strand 3
E
365 366anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
209 210first strand
Strand 2
E
213 214anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
288 290first strand
Strand 2
E
293 295anti-parallel
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