Analysis of interatomic Contacts of Structural Units in PDB entry:
8A7B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A7B entry

There are 2 chains in PDB entry 8A7B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 87ARG 427
B
 PHE 86LYS 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8A7B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 96Right-handed alpha
Helix 2
AA2
A
97 107Right-handed alpha
Helix 3
AA3
A
114 129Right-handed alpha
Helix 4
AA4
A
134 148Right-handed alpha
Helix 5
AA5
A
149 153Right-handed 310
Helix 6
AA6
A
154 184Right-handed alpha
Helix 7
AA7
A
194 197Right-handed 310
Helix 8
AA8
A
200 202Right-handed 310
Helix 9
AA9
A
203 224Right-handed alpha
Helix 10
AB1
A
228 252Right-handed alpha
Helix 11
AB2
A
261 264Right-handed 310
Helix 12
AB3
A
265 277Right-handed alpha
Helix 13
AB4
A
277 282Right-handed alpha
Helix 14
AB5
A
282 293Right-handed alpha
Helix 15
AB6
A
297 326Right-handed alpha
Helix 16
AB7
A
336 341Right-handed alpha
Helix 17
AB8
A
344 354Right-handed alpha
Helix 18
AB9
A
355 366Right-handed alpha
Helix 19
AC1
A
370 384Right-handed alpha
Helix 20
AC2
A
385 407Right-handed alpha
Helix 21
AC3
A
413 426Right-handed alpha
Helix 22
AC4
B
87 96Right-handed alpha
Helix 23
AC5
B
97 106Right-handed alpha
Helix 24
AC6
B
114 129Right-handed alpha
Helix 25
AC7
B
134 148Right-handed alpha
Helix 26
AC8
B
149 153Right-handed 310
Helix 27
AC9
B
154 184Right-handed alpha
Helix 28
AD1
B
206 224Right-handed alpha
Helix 29
AD2
B
228 252Right-handed alpha
Helix 30
AD3
B
261 264Right-handed 310
Helix 31
AD4
B
265 277Right-handed alpha
Helix 32
AD5
B
277 282Right-handed alpha
Helix 33
AD6
B
282 293Right-handed alpha
Helix 34
AD7
B
297 326Right-handed alpha
Helix 35
AD8
B
336 341Right-handed alpha
Helix 36
AD9
B
344 354Right-handed alpha
Helix 37
AE1
B
355 366Right-handed alpha
Helix 38
AE2
B
370 384Right-handed alpha
Helix 39
AE3
B
385 407Right-handed alpha
Helix 40
AE4
B
413 426Right-handed alpha
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There are 3 sheets in PDB entry 8A7B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
191 192anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
258 259anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
B
258 259anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il