Analysis of interatomic Contacts of Structural Units in PDB entry:
8A7D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A7D entry

There are 3 chains in PDB entry 8A7D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 94	TYR 1014
P	ARG 44	PHE 210
Q	PRO 1282	SER 1617

There are 43 helices in PDB entry 8A7D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	229	234	Right-handed 310
Helix 2	AA2	C	264	275	Right-handed alpha
Helix 3	AA3	C	292	296	Right-handed alpha
Helix 4	AA4	C	330	333	Right-handed 310
Helix 5	AA5	C	334	344	Right-handed alpha
Helix 6	AA6	C	371	388	Right-handed alpha
Helix 7	AA7	C	402	407	Right-handed alpha
Helix 8	AA8	C	415	419	Right-handed 310
Helix 9	AA9	C	425	429	Right-handed 310
Helix 10	AB1	C	430	432	Right-handed 310
Helix 11	AB2	C	433	438	Right-handed alpha
Helix 12	AB3	C	444	449	Right-handed 310
Helix 13	AB4	C	467	472	Right-handed 310
Helix 14	AB5	C	480	484	Right-handed 310
Helix 15	AB6	C	498	506	Right-handed alpha
Helix 16	AB7	C	534	538	Right-handed 310
Helix 17	AB8	C	547	551	Right-handed 310
Helix 18	AB9	C	557	568	Right-handed alpha
Helix 19	AC1	C	648	662	Right-handed alpha
Helix 20	AC2	C	740	744	Right-handed 310
Helix 21	AC3	C	762	766	Right-handed 310
Helix 22	AC4	C	776	780	Right-handed 310
Helix 23	AC5	C	875	879	Right-handed 310
Helix 24	AC6	C	953	957	Right-handed 310
Helix 25	AC7	C	1007	1012	Right-handed alpha
Helix 26	AC8	P	46	60	Right-handed alpha
Helix 27	AC9	P	65	72	Right-handed alpha
Helix 28	AD1	P	80	92	Right-handed alpha
Helix 29	AD2	P	93	95	Right-handed 310
Helix 30	AD3	P	96	118	Right-handed alpha
Helix 31	AD4	P	124	143	Right-handed alpha
Helix 32	AD5	P	144	152	Right-handed alpha
Helix 33	AD6	P	152	160	Right-handed alpha
Helix 34	AD7	P	161	168	Right-handed alpha
Helix 35	AD8	P	168	180	Right-handed alpha
Helix 36	AD9	P	182	202	Right-handed alpha
Helix 37	AE1	P	202	209	Right-handed alpha
Helix 38	AE2	Q	1359	1364	Right-handed 310
Helix 39	AE3	Q	1521	1525	Right-handed 310
Helix 40	AE4	Q	1548	1552	Right-handed 310
Helix 41	AE5	Q	1573	1575	Right-handed 310
Helix 42	AE6	Q	1576	1581	Right-handed alpha
Helix 43	AE7	Q	1613	1617	Right-handed 310

There are 18 sheets in PDB entry 8A7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	220	first strand
Strand 2	C	208	212	anti-parallel
Strand 3	C	196	203	anti-parallel
Strand 4	C	119	127	anti-parallel
Strand 5	C	250	259	anti-parallel
Strand 6	C	284	287	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	220	first strand
Strand 2	C	208	212	anti-parallel
Strand 3	C	196	203	anti-parallel
Strand 4	C	119	127	anti-parallel
Strand 5	C	250	259	anti-parallel
Strand 6	C	95	100	anti-parallel
Strand 7	C	307	310	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	167	175	anti-parallel
Strand 3	C	152	160	anti-parallel
Strand 4	C	135	142	anti-parallel
Strand 5	C	236	240	anti-parallel
Strand 6	C	106	108	anti-parallel
Strand 7	C	297	299	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	401	first strand
Strand 2	C	351	361	parallel
Strand 3	C	513	517	parallel
Strand 4	C	544	546	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	411	first strand
Strand 2	C	495	497	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	680	684	first strand
Strand 2	C	689	692	anti-parallel
Strand 3	C	907	910	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	713	714	first strand
Strand 2	C	718	722	anti-parallel
Strand 3	C	863	871	anti-parallel
Strand 4	C	793	802	anti-parallel
Strand 5	C	839	842	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	781	791	first strand
Strand 2	C	850	857	anti-parallel
Strand 3	C	815	820	anti-parallel
Strand 4	C	825	827	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	885	891	first strand
Strand 2	C	918	927	anti-parallel
Strand 3	C	930	931	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	885	891	first strand
Strand 2	C	918	927	anti-parallel
Strand 3	C	938	941	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	981	984	first strand
Strand 2	C	989	992	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1296	1299	first strand
Strand 2	Q	1309	1314	anti-parallel
Strand 3	Q	1326	1328	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1319	1321	first strand
Strand 2	Q	1341	1343	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1345	1346	first strand
Strand 2	Q	1367	1368	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1355	1357	first strand
Strand 2	Q	1372	1377	anti-parallel
Strand 3	Q	1394	1398	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1488	1491	first strand
Strand 2	Q	1501	1506	anti-parallel
Strand 3	Q	1536	1539	anti-parallel
Strand 4	Q	1545	1546	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1532	1533	first strand
Strand 2	Q	1511	1515	anti-parallel
Strand 3	Q	1553	1556	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	1566	1568	first strand
Strand 2	Q	1594	1596	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A7D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A7D