Analysis of interatomic Contacts of Structural Units in PDB entry:
8A82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A82 entry

There are 2 chains in PDB entry 8A82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 361
B
 SER 2MET 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8A82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
18 21Right-handed 310
Helix 3
AA3
A
24 41Right-handed alpha
Helix 4
AA4
A
47 66Right-handed alpha
Helix 5
AA5
A
73 76Right-handed 310
Helix 6
AA6
A
90 100Right-handed alpha
Helix 7
AA7
A
115 121Right-handed alpha
Helix 8
AA8
A
122 130Right-handed alpha
Helix 9
AA9
A
152 161Right-handed alpha
Helix 10
AB1
A
175 180Right-handed alpha
Helix 11
AB2
A
182 188Right-handed alpha
Helix 12
AB3
A
189 197Right-handed alpha
Helix 13
AB4
A
241 248Right-handed 310
Helix 14
AB5
A
267 275Right-handed alpha
Helix 15
AB6
A
275 281Right-handed alpha
Helix 16
AB7
A
336 344Right-handed alpha
Helix 17
AB8
A
346 361Right-handed alpha
Helix 18
AB9
B
28 41Right-handed alpha
Helix 19
AC1
B
45 49Right-handed 310
Helix 20
AC2
B
77 87Right-handed alpha
Helix 21
AC3
B
110 114Right-handed 310
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There are 6 sheets in PDB entry 8A82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
78 81anti-parallel
Strand 3
A
283 288parallel
Strand 4
A
235 239anti-parallel
Strand 5
A
302 306anti-parallel
Strand 6
A
216 220anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
293 296anti-parallel
Strand 3
A
225 232anti-parallel
Strand 4
A
311 320anti-parallel
Strand 5
A
200 210anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
134 139anti-parallel
Strand 3
A
168 170anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
258 260anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
12 16anti-parallel
Strand 3
B
3 7anti-parallel
Strand 4
B
95 99anti-parallel
Strand 5
B
106 108anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
69 71anti-parallel
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