Analysis of interatomic Contacts of Structural Units in PDB entry:
8A85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A85 entry

There are 6 chains in PDB entry 8A85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 25ASN 190
B
 ARG 24ASN 190
C
 ARG 24ASN 190
D
 PRO 25ASN 190
E
 PRO 25ASN 190
F
 PRO 25ASN 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8A85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 124Right-handed alpha
Helix 2
AA2
A
125 129Right-handed 310
Helix 3
AA3
A
131 134Right-handed 310
Helix 4
AA4
A
135 146Right-handed alpha
Helix 5
AA5
A
177 181Right-handed 310
Helix 6
AA6
A
184 188Right-handed 310
Helix 7
AA7
B
118 124Right-handed alpha
Helix 8
AA8
B
125 129Right-handed 310
Helix 9
AA9
B
131 134Right-handed 310
Helix 10
AB1
B
135 146Right-handed alpha
Helix 11
AB2
B
177 181Right-handed 310
Helix 12
AB3
B
184 188Right-handed 310
Helix 13
AB4
C
118 124Right-handed alpha
Helix 14
AB5
C
125 129Right-handed 310
Helix 15
AB6
C
131 134Right-handed 310
Helix 16
AB7
C
135 146Right-handed alpha
Helix 17
AB8
C
177 181Right-handed 310
Helix 18
AB9
C
184 188Right-handed 310
Helix 19
AC1
D
118 124Right-handed alpha
Helix 20
AC2
D
125 129Right-handed 310
Helix 21
AC3
D
131 134Right-handed 310
Helix 22
AC4
D
135 146Right-handed alpha
Helix 23
AC5
D
177 181Right-handed 310
Helix 24
AC6
D
184 188Right-handed 310
Helix 25
AC7
E
118 124Right-handed alpha
Helix 26
AC8
E
125 129Right-handed 310
Helix 27
AC9
E
131 134Right-handed 310
Helix 28
AD1
E
135 146Right-handed alpha
Helix 29
AD2
E
177 181Right-handed 310
Helix 30
AD3
E
184 188Right-handed 310
Helix 31
AD4
F
118 124Right-handed alpha
Helix 32
AD5
F
125 129Right-handed 310
Helix 33
AD6
F
131 134Right-handed 310
Helix 34
AD7
F
135 146Right-handed alpha
Helix 35
AD8
F
177 181Right-handed 310
Helix 36
AD9
F
184 188Right-handed 310
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There are 6 sheets in PDB entry 8A85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
58 63anti-parallel
Strand 3
A
48 55anti-parallel
Strand 4
A
37 43anti-parallel
Strand 5
A
152 165anti-parallel
Strand 6
A
110 117anti-parallel
Strand 7
A
99 105anti-parallel
Strand 8
A
87 93anti-parallel
Strand 9
A
79 84anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 77first strand
Strand 2
B
58 63anti-parallel
Strand 3
B
48 55anti-parallel
Strand 4
B
37 43anti-parallel
Strand 5
B
152 165anti-parallel
Strand 6
B
110 117anti-parallel
Strand 7
B
99 105anti-parallel
Strand 8
B
87 93anti-parallel
Strand 9
B
79 84anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 77first strand
Strand 2
C
58 63anti-parallel
Strand 3
C
48 55anti-parallel
Strand 4
C
37 43anti-parallel
Strand 5
C
152 165anti-parallel
Strand 6
C
110 117anti-parallel
Strand 7
C
99 105anti-parallel
Strand 8
C
87 93anti-parallel
Strand 9
C
79 84anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 77first strand
Strand 2
D
58 63anti-parallel
Strand 3
D
48 55anti-parallel
Strand 4
D
37 43anti-parallel
Strand 5
D
152 165anti-parallel
Strand 6
D
110 117anti-parallel
Strand 7
D
99 105anti-parallel
Strand 8
D
87 93anti-parallel
Strand 9
D
79 84anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
72 77first strand
Strand 2
E
58 63anti-parallel
Strand 3
E
48 55anti-parallel
Strand 4
E
37 43anti-parallel
Strand 5
E
152 165anti-parallel
Strand 6
E
110 117anti-parallel
Strand 7
E
99 105anti-parallel
Strand 8
E
87 93anti-parallel
Strand 9
E
79 84anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
72 77first strand
Strand 2
F
58 63anti-parallel
Strand 3
F
48 55anti-parallel
Strand 4
F
37 43anti-parallel
Strand 5
F
152 165anti-parallel
Strand 6
F
110 117anti-parallel
Strand 7
F
99 105anti-parallel
Strand 8
F
87 93anti-parallel
Strand 9
F
79 84anti-parallel
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